› 5mth

X-ray diffraction
1.73Å resolution

Structure of DC8E8 Fab at pH 6.5 crystallized in spacegroup P21

Released:
DOI: 10.2210/pdb5mth/pdb
PDB entry 5mth coloured by chain, front view.
PDB entry 5mth coloured by chain, side view.
PDB entry 5mth coloured by chain, top view.
Source organism: Mus musculus
Entry authors: Skrabana R, Novak M, Cehlar O, Kontsekova E

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-213840 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (3 distinct):
antibody Fab heavy chain Chains: A, H
Molecule details ›
Chains: A, H
Length: 221 amino acids
Theoretical weight: 23.8 KDa
Source organism: Mus musculus
Structure domains: Immunoglobulins
antibody Fab light chain Chains: B, L
Molecule details ›
Chains: B, L
Length: 219 amino acids
Theoretical weight: 24.28 KDa
Source organism: Mus musculus
Structure domains: Immunoglobulins

Ligands and Environments

Carbohydrate polymer : NEW Components: GLC
Carbohydrate polymer
1 bound ligand:
Ligand ACT 5 x ACT
1 modified residue:
Ligand PCA 2 x PCA

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X06DA
Spacegroup: P21
Unit cell:
a: 41.45Å b: 111.77Å c: 95.64Å
α: 90° β: 90.56° γ: 90°
R-values:
R R work R free
0.188 0.185 0.236

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