5mz6

Electron Microscopy
3.8Å resolution

Cryo-EM structure of a Separase-Securin complex from Caenorhabditis elegans at 3.8 A resolution

Released:
Source organism: Caenorhabditis elegans
Related structures: EMD-3583

Function and Biology Details

Reaction catalysed:
All bonds known to be hydrolyzed by this endopeptidase have arginine in P1 and an acidic residue in P4. P6 is often occupied by an acidic residue or by a hydroxy-amino-acid residue, the phosphorylation of which enhances cleavage.
Biochemical function:
Biological process:
Cellular component:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-124507 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Separin homolog sep-1 Chain: 1
Molecule details ›
Chain: 1
Length: 1262 amino acids
Theoretical weight: 144.32 KDa
Source organism: Caenorhabditis elegans
Expression system: Trichoplusia ni
UniProt:
  • Canonical: G5ED39 (Residues: 1-1262; Coverage: 100%)
Gene names: Y47G6A.12, sep-1
Sequence domains: Peptidase family C50
Securin-like protein Chain: B
Molecule details ›
Chain: B
Length: 244 amino acids
Theoretical weight: 27.03 KDa
Source organism: Caenorhabditis elegans
Expression system: Trichoplusia ni
UniProt:
  • Canonical: Q18235 (Residues: 1-244; Coverage: 100%)
Gene names: C27A2.3, ify-1

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.8Å
Relevant EMDB volumes: EMD-3583
Expression system: Trichoplusia ni