5nff

X-ray diffraction
2.62Å resolution

Crystal structure of GP1 receptor binding domain from Morogoro virus

Released:

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
PDBe Complex ID:
PDB-CPX-111668 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (4 distinct):
Pre-glycoprotein polyprotein GP complex Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
Molecule details ›
Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
Length: 171 amino acids
Theoretical weight: 19.41 KDa
Source organism: Morogoro mammarenavirus
Expression system: Trichoplusia ni
UniProt:
  • Canonical: C6ZK00 (Residues: 74-235; Coverage: 33%)
Gene name: GPC
Sequence domains: Arenavirus glycoprotein

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG
Carbohydrate polymer : NEW Components: NAG, MAN
Carbohydrate polymer : NEW Components: NAG, MAN
2 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID23-1
Spacegroup: P32
Unit cell:
a: 127.769Å b: 127.769Å c: 251.704Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.176 0.174 0.207
Expression system: Trichoplusia ni