5nxb

X-ray diffraction
3.6Å resolution

Mouse galactocerebrosidase in complex with saposin A

Released:

Function and Biology Details

Reaction catalysed:
D-galactosyl-N-acylsphingosine + H(2)O = D-galactose + N-acylsphingosine
Biochemical function:
Biological process:
Cellular component:

Structure analysis Details

Assembly composition:
hetero tetramer (preferred)
PDBe Complex ID:
PDB-CPX-157109 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (4 distinct):
Galactocerebrosidase Chains: A, B
Molecule details ›
Chains: A, B
Length: 654 amino acids
Theoretical weight: 74.6 KDa
Source organism: Mus musculus
Expression system: Homo sapiens
UniProt:
  • Canonical: P54818 (Residues: 41-684; Coverage: 100%)
Gene name: Galc
Sequence domains:
Structure domains:
Saposin-A Chains: C, D
Molecule details ›
Chains: C, D
Length: 87 amino acids
Theoretical weight: 9.57 KDa
Source organism: Mus musculus
Expression system: Escherichia coli
UniProt:
  • Canonical: Q61207 (Residues: 59-143; Coverage: 16%)
Gene names: Psap, Sgp1
Sequence domains:
Structure domains: Saposin-like

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG
Carbohydrate polymer : NEW Components: NAG, BMA
2 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I04-1
Spacegroup: P6222
Unit cell:
a: 187.183Å b: 187.183Å c: 360.24Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.218 0.217 0.231
Expression systems:
  • Homo sapiens
  • Escherichia coli