› 5nxd

X-ray diffraction
1.9Å resolution

LIM Domain Kinase 2 (LIMK2) In Complex With TH-300

Released:
DOI: 10.2210/pdb5nxd/pdb
PDB entry 5nxd coloured by chain, front view.
PDB entry 5nxd coloured by chain, side view.
PDB entry 5nxd coloured by chain, top view.
Source organism: Homo sapiens
Entry authors: Mathea S, Salah E, Hanke T, Newman JA, Oerum S, Wang D, Burgess-Brown N, von Delft F, Arrowsmith CH, Edwards AM, Bountra C, Bullock AN, Knapp S

Function and Biology Details

Reaction catalysed: 
ATP + a protein = ADP + a phosphoprotein
Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-156848 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
LIM domain kinase 2 Chains: A, B
Molecule details ›
Chains: A, B
Length: 305 amino acids
Theoretical weight: 34.8 KDa
Source organism: Homo sapiens
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: P53671 (Residues: 330-632; Coverage: 48%)
Gene name: LIMK2
Sequence domains: Protein tyrosine and serine/threonine kinase
Structure domains:

Ligands and Environments

2 bound ligands:
Ligand 9D8 2 x 9D8
Ligand EDO 2 x EDO
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I02
Spacegroup: P21
Unit cell:
a: 63.275Å b: 66.605Å c: 82.124Å
α: 90° β: 97.43° γ: 90°
R-values:
R R work R free
0.197 0.195 0.23
Expression system: Spodoptera frugiperda

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