5szs

Electron Microscopy
3.4Å resolution

Glycan shield and epitope masking of a coronavirus spike protein observed by cryo-electron microscopy

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-180235 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (8 distinct):
Spike glycoprotein Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 1325 amino acids
Theoretical weight: 146.81 KDa
Source organism: Human coronavirus NL63
Expression system: Drosophila melanogaster
UniProt:
  • Canonical: Q6Q1S2 (Residues: 16-1291; Coverage: 95%)
Gene names: 2, S
Sequence domains:

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG, BMA, MAN
Carbohydrate polymer : NEW Components: NAG
Carbohydrate polymer : NEW Components: NAG, BMA, MAN
Carbohydrate polymer : NEW Components: NAG, BMA, MAN
Carbohydrate polymer : NEW Components: NAG, BMA, MAN
Carbohydrate polymer : NEW Components: NAG, BMA
Carbohydrate polymer : NEW Components: NAG, BMA, MAN
1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.4Å
Relevant EMDB volumes: EMD-8331
Expression system: Drosophila melanogaster