› 5t2a

Electron Microscopy
2.9Å resolution

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Released:
DOI: 10.2210/pdb5t2a/pdb
PDB entry 5t2a coloured by chain, front view.
PDB entry 5t2a coloured by chain, side view.
PDB entry 5t2a coloured by chain, top view.
Source organism: Leishmania donovani
Primary publication:
Structures and stabilization of kinetoplastid-specific split rRNAs revealed by comparing leishmanial and human ribosomes.
Zhang X, Lai M, Chang W, Yu I, Ding K, Mrazek J, Ng HL, Yang OO, Maslov DA, Zhou ZH
Nat Commun 7 13223 (2016)
PMID: 27752045
Related structures: EMD-8343

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
hetero 80-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-236780 (preferred)
Entry contents:
71 distinct polypeptide molecules
9 distinct RNA molecules
Macromolecules (80 distinct):
Large ribosomal subunit protein uL15/eL18 domain-containing protein Chain: I
Molecule details ›
Chain: I
Length: 198 amino acids
Theoretical weight: 22.07 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: A0A3S7XBN1 (Residues: 1-198; Coverage: 100%)
Gene names: CGC20_27670, CGC21_14640, CGC21_33175, LDBPK_364730, LDHU3_13.0620, LDHU3_36.6360, LdCL_130009900, LdCL_360054400
Sequence domains: Ribosomal protein 60S L18 and 50S L18e
Ribosomal protein L10.e Chain: J
Molecule details ›
Chain: J
Length: 213 amino acids
Theoretical weight: 24.61 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: A0A3S5H5C4 (Residues: 1-213; Coverage: 100%)
Gene names: CGC20_9400, CGC20_9495, CGC21_2805, CGC21_2905, LDBPK_040750, LDHU3_04.0970, LDHU3_04.1190, LdCL_040013100, LdCL_040015100
Sequence domains: Ribosomal protein L16p/L10e
Ribosomal L5P C-terminus family protein Chain: K
Molecule details ›
Chain: K
Length: 188 amino acids
Theoretical weight: 21.71 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: A0A3S5H5A8 (Residues: 1-188; Coverage: 100%)
Gene names: CGC20_15690, CGC20_16800, CGC21_2680, CGC21_32945, LDBPK_220004, LDHU3_04.0620, LDHU3_22.0070, LdCL_040010100, LdCL_220005300
Sequence domains:
eL13 Chain: L
Molecule details ›
Chain: L
Length: 220 amino acids
Theoretical weight: 24.83 KDa
Source organism: Leishmania donovani
uL13 Chain: M
Molecule details ›
Chain: M
Length: 222 amino acids
Theoretical weight: 25.48 KDa
Source organism: Leishmania donovani
Large ribosomal subunit protein eL14 Chain: N
Molecule details ›
Chain: N
Length: 175 amino acids
Theoretical weight: 19.94 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: Q25278 (Residues: 1-175; Coverage: 100%)
Gene names: LPD23, RPL14
Sequence domains:
Ribosomal protein L15 Chain: O
Molecule details ›
Chain: O
Length: 204 amino acids
Theoretical weight: 24.5 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: E9BMB4 (Residues: 1-204; Coverage: 100%)
Gene names: CGC20_0090, CGC20_6005, CGC21_36545, CGC21_6465, LDBPK_303710, LDBPK_351890, LDHU3_30.4940, LdCL_300042500, LdCL_350024100
Sequence domains: Ribosomal L15
Ribosomal_protein_L22p/L17e_putative/Pfam:PF00237 Chain: P
Molecule details ›
Chain: P
Length: 166 amino acids
Theoretical weight: 19.15 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: A0A3S7WY02 (Residues: 1-166; Coverage: 100%)
Gene names: CGC20_11495, CGC21_15705, LDBPK_240040, LDHU3_24.0060, LdCL_240005300
Sequence domains: Ribosomal protein L22p/L17e
60S ribosomal protein L18a Chain: Q
Molecule details ›
Chain: Q
Length: 179 amino acids
Theoretical weight: 20.83 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: A0A3Q8II03 (Residues: 1-179; Coverage: 100%)
Gene names: CGC21_5870, LDBPK_350600, LdCL_350010900
Sequence domains: Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A
Large ribosomal subunit protein eL19 domain-containing protein Chain: R
Molecule details ›
Chain: R
Length: 245 amino acids
Theoretical weight: 28.14 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: E9B8Q2 (Residues: 1-245; Coverage: 100%)
Gene names: CGC21_24350, LDBPK_060410
Sequence domains: Ribosomal protein L19e
60S ribosomal protein L21, putative Chain: S
Molecule details ›
Chain: S
Length: 159 amino acids
Theoretical weight: 18.06 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: A0A3Q8ICH0 (Residues: 1-159; Coverage: 100%)
Gene names: CGC20_20775, CGC20_36460, CGC21_25130, CGC21_27025, LDBPK_343440, LDHU3_16.0550, LDHU3_34.5670, LdCL_160009600, LdCL_340043800
Sequence domains: Ribosomal protein L21e
Large ribosomal subunit protein eL22 Chain: T
Molecule details ›
Chain: T
Length: 129 amino acids
Theoretical weight: 15.03 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: A0A3Q8IJA8 (Residues: 1-129; Coverage: 100%)
Gene names: CGC20_28260, CGC21_14000, LDBPK_363430, LDHU3_36.4690, LdCL_360041100
Sequence domains: Ribosomal L22e protein family
60S_ribosomal_protein_L23_putative/GeneDB:LmjF.35.3790/GeneDB:LmjF.35.3800 Chain: U
Molecule details ›
Chain: U
Length: 139 amino acids
Theoretical weight: 14.98 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: A0A3Q8IIA7 (Residues: 1-139; Coverage: 100%)
Gene names: CGC20_14830, CGC20_14835, CGC21_7365, CGC21_7370, LDBPK_353840, LDHU3_35.5000, LDHU3_35.5010, LdCL_350043400, LdCL_350043500
Sequence domains: Ribosomal protein L14p/L23e
60S ribosomal protein L23a Chain: V
Molecule details ›
Chain: V
Length: 145 amino acids
Theoretical weight: 16.31 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: D1M863 (Residues: 1-145; Coverage: 100%)
Sequence domains: Ribosomal protein L23
eL24 Chain: W
Molecule details ›
Chain: W
Length: 124 amino acids
Theoretical weight: 14.61 KDa
Source organism: Leishmania donovani
uL24 Chain: X
Molecule details ›
Chain: X
Length: 143 amino acids
Theoretical weight: 16.22 KDa
Source organism: Leishmania donovani
KOW domain-containing protein Chain: Y
Molecule details ›
Chain: Y
Length: 134 amino acids
Theoretical weight: 15.46 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: E9BP34 (Residues: 1-134; Coverage: 100%)
Gene names: CGC20_34735, CGC21_20965, LDBPK_322830, LDBPK_322850, LDHU3_32.3590, LDHU3_32.3610, LdCL_320034200, LdCL_320034400
Sequence domains:
Large ribosomal subunit protein uL15/eL18 domain-containing protein Chain: Z
Molecule details ›
Chain: Z
Length: 145 amino acids
Theoretical weight: 16.17 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: A0A3Q8IGI9 (Residues: 1-145; Coverage: 100%)
Gene names: CGC20_14840, CGC20_14850, CGC21_7350, CGC21_7360, LDBPK_353810, LDHU3_35.4970, LDHU3_35.4990, LdCL_350043100, LdCL_350043300
Sequence domains: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Large ribosomal subunit protein eL28 Chain: a
Molecule details ›
Chain: a
Length: 147 amino acids
Theoretical weight: 16.41 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: A0A3Q8I959 (Residues: 1-147; Coverage: 100%)
Gene names: CGC20_31100, CGC20_31110, CGC21_0695, CGC21_0705, LDBPK_111110, LDHU3_11.1330, LDHU3_11.1350, LDHU3_11.1370, LdCL_110017100
Sequence domains: Ribosomal L28e protein family
eL29 Chain: b
Molecule details ›
Chain: b
Length: 70 amino acids
Theoretical weight: 8 KDa
Source organism: Leishmania donovani
uL2 Chain: c
Molecule details ›
Chain: c
Length: 260 amino acids
Theoretical weight: 28.32 KDa
Source organism: Leishmania donovani
uL3 Chain: d
Molecule details ›
Chain: d
Length: 419 amino acids
Theoretical weight: 47.59 KDa
Source organism: Leishmania donovani
Ribosomal protein eL8/eL30/eS12/Gadd45 domain-containing protein Chain: e
Molecule details ›
Chain: e
Length: 104 amino acids
Theoretical weight: 11.4 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: A0A3Q8IET6 (Residues: 1-104; Coverage: 100%)
Gene names: CGC20_0820, CGC21_5735, LDBPK_350240, LDHU3_35.0330, LdCL_350007400
Sequence domains: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
60S ribosomal subunit protein L31 Chain: f
Molecule details ›
Chain: f
Length: 183 amino acids
Theoretical weight: 20.89 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: E9BSK4 (Residues: 1-183; Coverage: 100%)
Gene names: LDBPK_353330, LDBPK_353340
Sequence domains: Ribosomal protein L31e
60S ribosomal protein L32 Chain: g
Molecule details ›
Chain: g
Length: 133 amino acids
Theoretical weight: 15.4 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: A0A3S7X954 (Residues: 1-133; Coverage: 100%)
Gene names: CGC20_0025, CGC21_6540, LDBPK_352040, LDHU3_35.2650, LdCL_350025600
Sequence domains: Ribosomal protein L32
Large ribosomal subunit protein eL34 Chain: h
Molecule details ›
Chain: h
Length: 168 amino acids
Theoretical weight: 19.31 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: A0A3Q8IHK2 (Residues: 1-168; Coverage: 100%)
Gene names: LDBPK_363930, LDHU3_18.1760, LDHU3_36.5270, LdCL_180019100, LdCL_360046300
Sequence domains: Ribosomal protein L34e
60S ribosomal protein L35 Chain: i
Molecule details ›
Chain: i
Length: 127 amino acids
Theoretical weight: 15.23 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: E9BIP6 (Residues: 1-127; Coverage: 100%)
Gene names: CGC20_5605, CGC20_5610, CGC21_32450, CGC21_32455, LDBPK_262350, LDBPK_262360, LDHU3_26.3070, LDHU3_26.3080
Sequence domains: Ribosomal L29 protein
Ribosomal_protein_l35a_putative/GeneDB:LmjF.10.00 70/GeneDB:LmjF.34.2470 Chain: j
Molecule details ›
Chain: j
Length: 144 amino acids
Theoretical weight: 16.49 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: A0A3Q8II82 (Residues: 1-144; Coverage: 100%)
Gene names: CGC20_21340, CGC20_35910, CGC21_23885, CGC21_26415, LDBPK_342240, LDHU3_10.0110, LDHU3_34.3730, LdCL_100005700, LdCL_340030100
Sequence domains: Ribosomal protein L35Ae
60S_ribosomal_protein_L36_putative/GeneDB:LmjF.21.0730 Chain: k
Molecule details ›
Chain: k
Length: 105 amino acids
Theoretical weight: 11.96 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: A0A3S7X961 (Residues: 1-105; Coverage: 100%)
Gene names: CGC20_0085, CGC21_6470, LDBPK_351900, LDHU3_35.2500, LdCL_350024200
Sequence domains: Ribosomal protein L36e
Large ribosomal subunit protein eL37 Chain: l
Molecule details ›
Chain: l
Length: 83 amino acids
Theoretical weight: 9.86 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: P62885 (Residues: 1-83; Coverage: 100%)
Gene name: RPL37
Sequence domains: Ribosomal protein L37e
60S ribosomal protein L37a Chain: m
Molecule details ›
Chain: m
Length: 92 amino acids
Theoretical weight: 10.34 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: E9BFK4 (Residues: 1-92; Coverage: 100%)
Gene names: LDBPK_212190, LDBPK_362020, LDHU3_21.2600, LDHU3_36.2630, LdCL_210027600, LdCL_360025700
Sequence domains: Ribosomal L37ae protein family
Ribosomal protein L38 Chain: n
Molecule details ›
Chain: n
Length: 83 amino acids
Theoretical weight: 9.48 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: E9B7P2 (Residues: 1-83; Coverage: 100%)
Gene names: LDBPK_030240, LDBPK_262230, LDHU3_03.0250, LDHU3_26.2920, LdCL_030007400, LdCL_260028000
Sequence domains: Ribosomal L38e protein family
60S ribosomal protein L39 Chain: o
Molecule details ›
Chain: o
Length: 51 amino acids
Theoretical weight: 6.5 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: E9BCX6 (Residues: 1-51; Coverage: 100%)
Gene names: LDBPK_161220, LDBPK_292480, LDHU3_16.1490, LDHU3_29.3680, LdCL_160017400, LdCL_290030800
Sequence domains: Ribosomal L39 protein
Large ribosomal subunit protein uL4 C-terminal domain-containing protein Chain: p
Molecule details ›
Chain: p
Length: 373 amino acids
Theoretical weight: 41.23 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: A0A3S5H7L0 (Residues: 1-373; Coverage: 100%)
Gene names: CGC20_25535, CGC20_25540, CGC20_25545, CGC21_28090, CGC21_28095, CGC21_28100, CGC21_28105, LDBPK_291160, LDHU3_29.1610, LDHU3_29.1620, LDHU3_29.1630, LdCL_290016700, LdCL_290016800, LdCL_290016900
Sequence domains:
Ubiquitin-ribosomal protein eL40 fusion protein Chain: q
Molecule details ›
Chain: q
Length: 128 amino acids
Theoretical weight: 14.71 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: A0A3Q8ISR1 (Residues: 1-128; Coverage: 100%)
Gene names: CGC20_3125, CGC20_3180, CGC21_11230, CGC21_11280, CGC21_36880, LDBPK_311930, LDHU3_31.3500, LDHU3_31.3730, LdCL_090014900, LdCL_310027200, LdCL_310028700
Sequence domains:
60S ribosomal protein L44 Chain: r
Molecule details ›
Chain: r
Length: 106 amino acids
Theoretical weight: 12.3 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: E9BBL5 (Residues: 1-106; Coverage: 100%)
Gene names: CGC20_16835, CGC20_9735, CGC21_33710, CGC21_5530, LDBPK_131410, LDBPK_333380, LDHU3_13.1930, LDHU3_33.4890, LdCL_130021400, LdCL_330041500
Sequence domains: Ribosomal protein L44
Large ribosomal subunit protein uL18 C-terminal eukaryotes domain-containing protein Chain: s
Molecule details ›
Chain: s
Length: 305 amino acids
Theoretical weight: 34.1 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: A0A3Q8IJC5 (Residues: 1-305; Coverage: 100%)
Gene names: CGC20_0095, CGC20_0100, CGC20_0105, CGC20_0110, CGC21_6440, CGC21_6445, CGC21_6450, CGC21_6455, CGC21_6460, LDBPK_351870, LDHU3_35.2440, LDHU3_35.2450, LDHU3_35.2460, LDHU3_35.2470, LDHU3_35.2480, LdCL_350023600, LdCL_350023700, LdCL_350023800, LdCL_350023900, LdCL_350024000
Sequence domains:
eL6 Chain: t
Molecule details ›
Chain: t
Length: 195 amino acids
Theoretical weight: 21.09 KDa
Source organism: Leishmania donovani
60S ribosomal protein L7 Chain: u
Molecule details ›
Chain: u
Length: 252 amino acids
Theoretical weight: 28.92 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: E9BI29 (Residues: 1-252; Coverage: 100%)
Gene name: LDBPK_260160
Sequence domains:
60S ribosomal protein L7a Chain: v
Molecule details ›
Chain: v
Length: 348 amino acids
Theoretical weight: 39.18 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: E9B949 (Residues: 1-348; Coverage: 100%)
Gene name: LDBPK_070550
Sequence domains: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Large ribosomal subunit protein uL6 alpha-beta domain-containing protein Chain: w
Molecule details ›
Chain: w
Length: 190 amino acids
Theoretical weight: 21.57 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: A0A3S7WWL2 (Residues: 1-190; Coverage: 100%)
Gene names: CGC20_15980, CGC20_22295, CGC21_34295, LDBPK_211290, LDHU3_21.1520, LdCL_210018000
Sequence domains: Ribosomal protein L6
Small ribosomal subunit protein eS1 Chain: 0
Molecule details ›
Chain: 0
Length: 264 amino acids
Theoretical weight: 30.06 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: E9BRS2 (Residues: 1-264; Coverage: 100%)
Gene names: CGC20_0740, CGC20_0745, CGC21_5810, CGC21_5815, LDBPK_350400, LDBPK_350410, LDHU3_35.0560, LDHU3_35.0570, LdCL_350009100, LdCL_350009200
Sequence domains: Ribosomal S3Ae family
40S ribosomal protein S4 Chain: 1
Molecule details ›
Chain: 1
Length: 273 amino acids
Theoretical weight: 30.71 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: A0A3Q8I8K3 (Residues: 1-273; Coverage: 100%)
Gene names: LDBPK_131120, LDHU3_13.1380, LDHU3_13.1390, LdCL_130016500, LdCL_130016600
Sequence domains:
eS6 Chain: 3
Molecule details ›
Chain: 3
Length: 249 amino acids
Theoretical weight: 28.37 KDa
Source organism: Leishmania donovani
eS7 Chain: 4
Molecule details ›
Chain: 4
Length: 200 amino acids
Theoretical weight: 23.77 KDa
Source organism: Leishmania donovani
40S ribosomal protein S8 Chain: 5
Molecule details ›
Chain: 5
Length: 220 amino acids
Theoretical weight: 25.07 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: A0A3Q8ID68 (Residues: 1-220; Coverage: 100%)
Gene names: CGC21_16660, CGC21_16665, LDBPK_242160, LdCL_240027200, LdCL_240027300
Sequence domains: Ribosomal protein S8e
40S ribosomal protein S9, putative Chain: 6
Molecule details ›
Chain: 6
Length: 190 amino acids
Theoretical weight: 22.18 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: A0A3S5H5Z2 (Residues: 1-190; Coverage: 100%)
Gene names: CGC20_1155, CGC20_29260, CGC21_12965, LDBPK_361310, LDHU3_07.0910, LDHU3_36.1650, LdCL_070012400, LdCL_360018200
Sequence domains:
LACK protective antigen Chain: 7
Molecule details ›
Chain: 7
Length: 312 amino acids
Theoretical weight: 34.46 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: Q9BIJ5 (Residues: 1-312; Coverage: 100%)
Sequence domains: WD domain, G-beta repeat
Ribosomal protein S29 Chain: 8
Molecule details ›
Chain: 8
Length: 57 amino acids
Theoretical weight: 6.7 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: E9BJV7 (Residues: 1-57; Coverage: 100%)
Gene names: LDBPK_282360, LDBPK_282650, LDHU3_28.3200, LDHU3_28.3580, LdCL_280028700, LdCL_280031600
Sequence domains: Ribosomal protein S14p/S29e
uS2 Chain: AC
Molecule details ›
Chain: AC
Length: 246 amino acids
Theoretical weight: 27.54 KDa
Source organism: Leishmania donovani
Plectin/eS10 N-terminal domain-containing protein Chain: AD
Molecule details ›
Chain: AD
Length: 153 amino acids
Theoretical weight: 17.43 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: E9BTG4 (Residues: 1-153; Coverage: 100%)
Gene name: LDBPK_361040
Sequence domains: Plectin/S10 domain
uS17 Chain: AE
Molecule details ›
Chain: AE
Length: 173 amino acids
Theoretical weight: 19.98 KDa
Source organism: Leishmania donovani
uS15 Chain: AG
Molecule details ›
Chain: AG
Length: 151 amino acids
Theoretical weight: 17.48 KDa
Source organism: Leishmania donovani
uS11 Chain: AH
Molecule details ›
Chain: AH
Length: 144 amino acids
Theoretical weight: 15.62 KDa
Source organism: Leishmania donovani
uS19 Chain: AI
Molecule details ›
Chain: AI
Length: 152 amino acids
Theoretical weight: 17.47 KDa
Source organism: Leishmania donovani
40S ribosomal protein S15A Chain: AJ
Molecule details ›
Chain: AJ
Length: 130 amino acids
Theoretical weight: 14.72 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: E9BAV6 (Residues: 1-130; Coverage: 100%)
Gene names: CGC20_25145, CGC20_31130, CGC21_28485, LDBPK_111180, LDBPK_291920, LDHU3_11.1430, LDHU3_29.2740, LdCL_110017700, LdCL_290024900
Sequence domains: Ribosomal protein S8
40S ribosomal protein S16 Chain: AK
Molecule details ›
Chain: AK
Length: 149 amino acids
Theoretical weight: 16.72 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: E9BI96 (Residues: 1-149; Coverage: 100%)
Gene names: CGC20_4945, CGC21_31780, CGC21_31785, LDBPK_260840, LDBPK_260850, LDHU3_26.1100, LdCL_260014100, LdCL_260014200
Sequence domains: Ribosomal protein S9/S16
eS17 Chain: AL
Molecule details ›
Chain: AL
Length: 143 amino acids
Theoretical weight: 16.45 KDa
Source organism: Leishmania donovani
40S ribosomal protein S18 Chain: AM
Molecule details ›
Chain: AM
Length: 153 amino acids
Theoretical weight: 17.44 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: E9BTF9 (Residues: 14-166; Coverage: 92%)
Gene names: LDBPK_360990, LDBPK_361000, LdCL_360015000
Sequence domains: Ribosomal protein S13/S18
Small ribosomal subunit protein uS7 domain-containing protein Chain: AN
Molecule details ›
Chain: AN
Length: 190 amino acids
Theoretical weight: 21.34 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: Q868B1 (Residues: 1-190; Coverage: 100%)
Gene names: LMJF_11_0960, LMJF_11_0970
Sequence domains: Ribosomal protein S7p/S5e
40S ribosomal protein S19 protein Chain: AO
Molecule details ›
Chain: AO
Length: 179 amino acids
Theoretical weight: 20.19 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: E9BR60 (Residues: 1-179; Coverage: 100%)
Gene name: LDBPK_342620
Sequence domains: Ribosomal protein S19e
uS5 Chain: AP
Molecule details ›
Chain: AP
Length: 265 amino acids
Theoretical weight: 28.85 KDa
Source organism: Leishmania donovani
Small ribosomal subunit protein uS10 domain-containing protein Chain: AQ
Molecule details ›
Chain: AQ
Length: 116 amino acids
Theoretical weight: 13.03 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: E9BJI2 (Residues: 1-116; Coverage: 100%)
Gene names: CGC20_13545, CGC20_13555, CGC21_22050, LDBPK_281100, LDBPK_281120, LDHU3_28.1350, LDHU3_28.1370, LdCL_280015600, LdCL_280015800
Sequence domains: Ribosomal protein S10p/S20e
eS21 Chain: AR
Molecule details ›
Chain: AR
Length: 164 amino acids
Theoretical weight: 17.1 KDa
Source organism: Leishmania donovani
uS12 Chain: AS
Molecule details ›
Chain: AS
Length: 143 amino acids
Theoretical weight: 15.95 KDa
Source organism: Leishmania donovani
eS24 Chain: AT
Molecule details ›
Chain: AT
Length: 137 amino acids
Theoretical weight: 15.91 KDa
Source organism: Leishmania donovani
eS26 Chain: AV
Molecule details ›
Chain: AV
Length: 112 amino acids
Theoretical weight: 12.75 KDa
Source organism: Leishmania donovani
eS27 Chain: AW
Molecule details ›
Chain: AW
Length: 86 amino acids
Theoretical weight: 9.8 KDa
Source organism: Leishmania donovani
uS3 Chain: AX
Molecule details ›
Chain: AX
Length: 219 amino acids
Theoretical weight: 24.54 KDa
Source organism: Leishmania donovani
40S ribosomal protein S30 Chain: AY
Molecule details ›
Chain: AY
Length: 66 amino acids
Theoretical weight: 7.39 KDa
Source organism: Leishmania donovani
UniProt:
  • Canonical: E9BLG3 (Residues: 1-66; Coverage: 100%)
Gene names: LDBPK_300690, LDBPK_300710, LDHU3_30.0880, LDHU3_30.0890, LDHU3_30.0900, LdCL_300012000, LdCL_300012100, LdCL_300012200
Sequence domains: Ribosomal protein S30
eS28 Chain: AZ
Molecule details ›
Chain: AZ
Length: 87 amino acids
Theoretical weight: 9.71 KDa
Source organism: Leishmania donovani
LSU-alpha Chain: A
Molecule details ›
Chain: A
Length: 1781 nucleotides
Theoretical weight: 576.31 KDa
Sequence domains: Eukaryotic large subunit ribosomal RNA
LSU-beta Chain: B
Molecule details ›
Chain: B
Length: 1465 nucleotides
Theoretical weight: 471.47 KDa
Sequence domains: Eukaryotic large subunit ribosomal RNA
5.8S ribosomal RNA Chain: C
Molecule details ›
Chain: C
Length: 262 nucleotides
Theoretical weight: 84.35 KDa
Sequence domains: 5.8S ribosomal RNA
5S ribosomal RNA Chain: D
Molecule details ›
Chain: D
Length: 120 nucleotides
Theoretical weight: 38.53 KDa
Sequence domains: 5S ribosomal RNA
srRNA1 Chain: E
Molecule details ›
Chain: E
Length: 213 nucleotides
Theoretical weight: 68.19 KDa
srRNA3 Chain: F
Molecule details ›
Chain: F
Length: 73 nucleotides
Theoretical weight: 23.36 KDa
srRNA2 Chain: G
Molecule details ›
Chain: G
Length: 183 nucleotides
Theoretical weight: 59.08 KDa
Sequence domains: Eukaryotic large subunit ribosomal RNA
srRNA4 Chain: H
Molecule details ›
Chain: H
Length: 127 nucleotides
Theoretical weight: 40.97 KDa
18S Ribosomal RNA Chain: 2
Molecule details ›
Chain: 2
Length: 2205 nucleotides
Theoretical weight: 710.27 KDa
Sequence domains: Eukaryotic small subunit ribosomal RNA

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 2.9Å
Relevant EMDB volumes: EMD-8343

Quick links

Citations

7 review citations

Ribosome Stoichiometry: From Form to Function.
Emmott et al. (2019)
6 more

5 mentions without citation

Ribosome Specialization in Protozoa Parasites.
Rodríguez-Almonacid et al. (2023)
4 more