› 5te3

X-ray diffraction
2.7Å resolution

Crystal structure of Bos taurus opsin at 2.7 Angstrom

Released:
DOI: 10.2210/pdb5te3/pdb
Model geometry
Fit model/data
PDB entry 5te3 coloured by chain, front view.
PDB entry 5te3 coloured by chain, side view.
PDB entry 5te3 coloured by chain, top view.
Source organism: Bos taurus
Primary publication:
Photocyclic behavior of rhodopsin induced by an atypical isomerization mechanism.
Gulati S, Jastrzebska B, Banerjee S, Placeres ÁL, Miszta P, Gao S, Gunderson K, Tochtrop GP, Filipek S, Katayama K, Kiser PD, Mogi M, Stewart PL, Palczewski K
Proc Natl Acad Sci U S A 114 E2608-E2615 (2017)
PMID: 28289214

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assemblies composition:
monomeric (preferred)
homo dimer
Assembly name:
PDBe Complex ID:
PDB-CPX-136065 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (2 distinct):
Rhodopsin Chain: A
Molecule details ›
Chain: A
Length: 348 amino acids
Theoretical weight: 39.03 KDa
Source organism: Bos taurus
UniProt:
  • Canonical: P02699 (Residues: 1-348; Coverage: 100%)
Gene name: RHO
Sequence domains:
Structure domains: Rhodopsin 7-helix transmembrane proteins

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG, BMA, MAN
Carbohydrate polymer
3 bound ligands:
Ligand BOG 3 x BOG
Ligand PLM 2 x PLM
Ligand SO4 2 x SO4
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: APS BEAMLINE 24-ID-C
Spacegroup: R32
Unit cell:
a: 242.66Å b: 242.66Å c: 111.77Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.245 0.245 0.254

Quick links

Citations

5 review citations

Dynamic lipid turnover in photoreceptors and retinal pigment epithelium throughout life.
Lewandowski et al. (2022)
4 more

11 mentions without citation

Structural Basis for G Protein-Coupled Receptor Activation.
Manglik et al. (2017)
10 more