› 5uf6

Electron Microscopy
2.8Å resolution

The 2.8 A Electron Microscopy Structure of Adeno-Associated Virus-DJ Bound by a Heparanoid Pentasaccharide

Released:
DOI: 10.2210/pdb5uf6/pdb
PDB entry 5uf6 coloured by chain, front view.
PDB entry 5uf6 coloured by chain, side view.
PDB entry 5uf6 coloured by chain, top view.
Source organism: Adeno-associated virus
Primary publication:
The 2.8 Å Electron Microscopy Structure of Adeno-Associated Virus-DJ Bound by a Heparinoid Pentasaccharide.
Xie Q, Spear JM, Noble AJ, Sousa DR, Meyer NL, Davulcu O, Zhang F, Linhardt RJ, Stagg SM, Chapman MS
OpenAccess logo Mol Ther Methods Clin Dev 5 1-12 (2017)
PMID: 28480299
Related structures: EMD-8574

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo 60-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-166156 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (2 distinct):
capsid protein VP1 Chain: A
Molecule details ›
Chain: A
Length: 517 amino acids
Theoretical weight: 58.58 KDa
Source organism: Adeno-associated virus
Expression system: Spodoptera frugiperda
Structure domains: Parvovirus coat protein VP1/VP2

Ligands and Environments

Carbohydrate polymer : NEW Components: ZDO, IDS, SUS, BDP, SGN
Carbohydrate polymer
No bound ligands
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this EM entry.
Resolution: 2.8Å
Relevant EMDB volumes: EMD-8574
Expression system: Spodoptera frugiperda

Quick links

Citations

7 review citations

Cryo-EM in drug discovery: achievements, limitations and prospects.
Renaud et al. (2018)
6 more

5 mentions without citation

Cryo-electron Microscopy of Adeno-associated Virus.
Stagg et al. (2022)
4 more