5v5v

X-ray diffraction
4.11Å resolution

Complex of NLGN2 with MDGA1 Ig1-Ig2

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero tetramer (preferred)
PDBe Complex ID:
PDB-CPX-178976 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Neuroligin-2 Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 582 amino acids
Theoretical weight: 64.84 KDa
Source organism: Rattus norvegicus
Expression system: Trichoplusia ni
UniProt:
  • Canonical: Q62888 (Residues: 42-612; Coverage: 70%)
Gene name: Nlgn2
Sequence domains: Carboxylesterase family
MAM domain-containing glycosylphosphatidylinositol anchor protein 1 Chains: G, H, I, J, K, L
Molecule details ›
Chains: G, H, I, J, K, L
Length: 230 amino acids
Theoretical weight: 25.93 KDa
Source organism: Homo sapiens
Expression system: Trichoplusia ni
UniProt:
  • Canonical: Q8NFP4 (Residues: 22-237; Coverage: 23%)
Gene names: MAMDC3, MDGA1
Sequence domains: Immunoglobulin domain

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 21-ID-F
Spacegroup: P1
Unit cell:
a: 103.118Å b: 97.182Å c: 190.51Å
α: 95.52° β: 80.97° γ: 88.71°
R-values:
R R work R free
0.29 0.289 0.319
Expression system: Trichoplusia ni