› 5w40

X-ray diffraction
2.53Å resolution

Crystal structure of PopP2 F318S in complex with IP6 and AcCoA

Released:
DOI: 10.2210/pdb5w40/pdb
PDB entry 5w40 coloured by chain, front view.
PDB entry 5w40 coloured by chain, side view.
PDB entry 5w40 coloured by chain, top view.
Source organism: Ralstonia solanacearum
Primary publication:
Mechanism of host substrate acetylation by a YopJ family effector.
Zhang ZM, Ma KW, Gao L, Hu Z, Schwizer S, Ma W, Song J
Nat Plants 3 17115 (2017)
PMID: 28737762

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-102703 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
PopP2 protein Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 352 amino acids
Theoretical weight: 38.68 KDa
Source organism: Ralstonia solanacearum
Expression system: Escherichia coli
UniProt:
  • Canonical: A0A0S4VB05 (Residues: 81-420; Coverage: 81%)
Gene names: RUN1985_v1_1190012, popp
Sequence domains: YopJ Serine/Threonine acetyltransferase

Ligands and Environments

2 bound ligands:
Ligand IHP 4 x IHP
Ligand COA 4 x COA
1 modified residue:
Ligand SCY 4 x SCY

Experiments and Validation Details

Entry percentile scores
X-ray source: ALS BEAMLINE 5.0.2
Spacegroup: P1
Unit cell:
a: 77.777Å b: 78.645Å c: 79.849Å
α: 103° β: 112.43° γ: 111.85°
R-values:
R R work R free
0.19 0.188 0.235
Expression system: Escherichia coli

Quick links

Citations

13 review citations

Thirty years of resistance: Zig-zag through the plant immune system.
Ngou et al. (2022)
12 more

1 mention without citation

Mechanism of host substrate acetylation by a YopJ family effector.
Zhang et al. (2017)