› 5xeg

X-ray diffraction
1.8Å resolution

The structure of OsALKBH1

Released:
DOI: 10.2210/pdb5xeg/pdb
PDB entry 5xeg coloured by chain, front view.
PDB entry 5xeg coloured by chain, side view.
PDB entry 5xeg coloured by chain, top view.
Source organism: Oryza sativa Japonica Group
Primary publication:
Identification and analysis of adenine N6-methylation sites in the rice genome.
Zhou C, Wang C, Liu H, Zhou Q, Liu Q, Guo Y, Peng T, Song J, Zhang J, Chen L, Zhao Y, Zeng Z, Zhou DX
Nat Plants 4 554-563 (2018)
PMID: 30061746

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-171256 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed Chain: A
Molecule details ›
Chain: A
Length: 231 amino acids
Theoretical weight: 25.71 KDa
Source organism: Oryza sativa Japonica Group
Expression system: Escherichia coli
UniProt:
  • Canonical: Q10BI6 (Residues: 141-371; Coverage: 62%)
Gene name: LOC_Os03g60190
Sequence domains: 2OG-Fe(II) oxygenase superfamily

Ligands and Environments

2 bound ligands:
Ligand AKG 1 x AKG
Ligand MN 1 x MN
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 17-BM
Spacegroup: C2
Unit cell:
a: 50.15Å b: 67.729Å c: 67.967Å
α: 90° β: 99.89° γ: 90°
R-values:
R R work R free
0.164 0.161 0.208
Expression system: Escherichia coli

Quick links

Citations

18 review citations

Small DNA Methylation, Big Player in Plant Abiotic Stress Responses and Memory.
Liu et al. (2020)
17 more

2 mentions without citation

Harnessing Current Knowledge of DNA N6-Methyladenosine From Model Plants for Non-model Crops.
Chachar et al. (2021)
1 more