5xm9

X-ray diffraction
3.05Å resolution

Crystal structure of AsfvPolX in complex with DNA enzyme.

Released:

Function and Biology Details

Reaction catalysed:
Deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)
Biochemical function:
Biological process:
Cellular component:

Structure analysis Details

Assembly composition:
hetero tetramer (preferred)
PDBe Complex ID:
PDB-CPX-119398 (preferred)
Entry contents:
1 distinct polypeptide molecule
2 distinct DNA molecules
Macromolecules (3 distinct):
Repair DNA polymerase X Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 177 amino acids
Theoretical weight: 20.55 KDa
Source organism: African swine fever virus BA71V
Expression system: Escherichia coli
UniProt:
  • Canonical: P42494 (Residues: 1-174; Coverage: 100%)
Gene names: Ba71V-97, O174L
Sequence domains:
Structure domains:
DNA (36-MER) Chains: E, G
Molecule details ›
Chains: E, G
Length: 36 nucleotides
Theoretical weight: 10.99 KDa
Source organism: synthetic construct
Expression system: Not provided
DNA (23-mer) Chains: F, H
Molecule details ›
Chains: F, H
Length: 23 nucleotides
Theoretical weight: 7.19 KDa
Source organism: synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL19U1
Spacegroup: C2221
Unit cell:
a: 98.94Å b: 118.878Å c: 235.955Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.219 0.215 0.278
Expression systems:
  • Escherichia coli
  • Not provided