5xnp

X-ray diffraction
3.73Å resolution

Crystal structures of human SALM5 in complex with human PTPdelta

Released:
Model geometry
Fit model/data
Source organism: Homo sapiens

Function and Biology Details

Reaction catalysed:
Protein tyrosine phosphate + H(2)O = protein tyrosine + phosphate
Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero tetramer (preferred)
PDBe Complex ID:
PDB-CPX-149978 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Leucine-rich repeat and fibronectin type-III domain-containing protein 5 Chains: A, B
Molecule details ›
Chains: A, B
Length: 361 amino acids
Theoretical weight: 40.47 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: Q96NI6 (Residues: 18-374; Coverage: 51%)
Gene names: C14orf146, LRFN5, SALM5
Sequence domains:
Receptor-type tyrosine-protein phosphatase delta Chains: D, E
Molecule details ›
Chains: D, E
Length: 291 amino acids
Theoretical weight: 32.05 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: P23468 (Residues: 21-320; Coverage: 15%)
  • Best match: P23468-2 (Residues: 21-216, 217-307)
Gene name: PTPRD
Sequence domains:

Ligands and Environments

No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: SSRF BEAMLINE BL19U1
Spacegroup: I23
Unit cell:
a: 249.384Å b: 249.384Å c: 249.384Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.233 0.232 0.264
Expression system: Homo sapiens