› 5xss

X-ray diffraction
2.09Å resolution

XylFII molecule

Released:
DOI: 10.2210/pdb5xss/pdb
PDB entry 5xss coloured by chain, front view.
PDB entry 5xss coloured by chain, side view.
PDB entry 5xss coloured by chain, top view.
Source organism: Clostridium beijerinckii NCIMB 8052
Primary publication:
Molecular mechanism of environmental d-xylose perception by a XylFII-LytS complex in bacteria.
Li J, Wang C, Yang G, Sun Z, Guo H, Shao K, Gu Y, Jiang W, Zhang P
Proc Natl Acad Sci U S A 114 8235-8240 (2017)
PMID: 28716923

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-107974 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Periplasmic binding protein domain-containing protein Chains: A, B, C, X
Molecule details ›
Chains: A, B, C, X
Length: 316 amino acids
Theoretical weight: 34.81 KDa
Source organism: Clostridium beijerinckii NCIMB 8052
Expression system: Escherichia coli
UniProt:
  • Canonical: A6LW07 (Residues: 25-326; Coverage: 93%)
Gene name: Cbei_2377
Sequence domains: Periplasmic binding protein domain

Ligands and Environments

1 bound ligand:
Ligand XYP 4 x XYP
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL17U1
Spacegroup: P1
Unit cell:
a: 67.541Å b: 68.059Å c: 76.677Å
α: 89.89° β: 65.15° γ: 87.33°
R-values:
R R work R free
0.182 0.18 0.214
Expression system: Escherichia coli

Quick links

Citations

3 review citations

The role of solute binding proteins in signal transduction.
Matilla et al. (2021)
2 more

3 mentions without citation

Molecular mechanism of environmental d-xylose perception by a XylFII-LytS complex in bacteria.
Li et al. (2017)
2 more