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› 5zw6

X-ray diffraction
2.05Å resolution

Structure of spAimR

Released:
DOI: 10.2210/pdb5zw6/pdb
Model geometry
Fit model/data
PDB entry 5zw6 coloured by chain, front view.
PDB entry 5zw6 coloured by chain, side view.
PDB entry 5zw6 coloured by chain, top view.
Source organisms:
Primary publication:
Structural and functional insights into the regulation of the lysis-lysogeny decision in viral communities.
Dou C, Xiong J, Gu Y, Yin K, Wang J, Hu Y, Zhou D, Fu X, Qi S, Zhu X, Yao S, Xu H, Nie C, Liang Z, Yang S, Wei Y, Cheng W
Nat Microbiol 3 1285-1294 (2018)
PMID: 30323253

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
hetero tetramer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-130265 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
AimR transcriptional regulator Chains: A, B
Molecule details ›
Chains: A, B
Length: 391 amino acids
Theoretical weight: 46.03 KDa
Source organism: Spbetavirus SPbeta
Expression system: Escherichia coli K-12
UniProt:
  • Canonical: O64094 (Residues: 1-386; Coverage: 100%)
Gene names: aimR, yopK
Sequence domains: AimR transcriptional regulator-like
GLY-MET-PRO-ARG-GLY-ALA Chains: C, D
Molecule details ›
Chains: C, D
Length: 6 amino acids
Theoretical weight: 589 Da
Source organism: synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: SSRF BEAMLINE BL19U1
Spacegroup: P21212
Unit cell:
a: 150.795Å b: 193.576Å c: 33.321Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.192 0.19 0.234
Expression systems:
  • Escherichia coli K-12
  • Not provided

Quick links

Citations

7 review citations

The arms race between bacteria and their phage foes.
Hampton et al. (2020)
6 more

1 mention without citation

Insights into the mechanism of action of the arbitrium communication system in SPbeta phages.
Gallego Del Sol et al. (2022)