› 6a02

X-ray diffraction
1.4Å resolution

Salmonella Typhi YfdX in the F222 space group at 1.4 A resolution

Released:
DOI: 10.2210/pdb6a02/pdb
PDB entry 6a02 coloured by chain, front view.
PDB entry 6a02 coloured by chain, side view.
PDB entry 6a02 coloured by chain, top view.
Source organism: Salmonella enterica subsp. enterica
Primary publication:
Structural and Physiological Exploration of Salmonella Typhi YfdX Uncovers Its Dual Function in Bacterial Antibiotic Stress and Virulence.
Lee HS, Lee S, Kim JS, Lee HR, Shin HC, Lee MS, Jin KS, Kim CH, Ku B, Ryu CM, Kim SJ
Front Microbiol 9 3329 (2018)
PMID: 30692978

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
homo tetramer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-101147 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
YfdX family protein Chain: A
Molecule details ›
Chain: A
Length: 185 amino acids
Theoretical weight: 20.63 KDa
Source organism: Salmonella enterica subsp. enterica
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A0D6IF67 (Residues: 21-197; Coverage: 93%)
Gene names: AAB27_07020, AU613_04990, AVC05_03020, B1P38_24180, CE70_24850, CFF59_13195, CVR97_27555, DD95_18145, DMO92_03350, DPF41_24740, DPS76_01120, DRM14_03575, DU071_10280, E0935_02055, EER35_02950, F3R12_03875, G0L48_23315, GB466_01635, SE14_03224, yfdX
Sequence domains: YfdX protein
Structure domains:

Ligands and Environments

2 bound ligands:
Ligand CL 4 x CL
Ligand NA 1 x NA
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PAL/PLS BEAMLINE 5C (4A)
Spacegroup: F222
Unit cell:
a: 88.831Å b: 92.459Å c: 95.487Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.19 0.189 0.213
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

1 review citation

Horizontal Transmission of Stress Resistance Genes Shape the Ecology of Beta- and Gamma-Proteobacteria.
Kamal et al. (2021)
4 other articles

1 mention without citation

Structural and Physiological Exploration of Salmonella Typhi YfdX Uncovers Its Dual Function in Bacterial Antibiotic Stress and Virulence.
Lee et al. (2018)