› 6a3z

Solution NMR

Zinc finger domain from the HRD1 Protein

Released:
DOI: 10.2210/pdb6a3z/pdb
PDB entry 6a3z coloured by chain, ensemble of 20 models, front view.
PDB entry 6a3z coloured by chain, ensemble of 20 models, side view.
PDB entry 6a3z coloured by chain, ensemble of 20 models, top view.
Source organism: Homo sapiens
Entry author: Miyamoto K

Function and Biology Details

Reaction catalysed: 
S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine
Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-183169 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
E3 ubiquitin-protein ligase synoviolin Chain: A
Molecule details ›
Chain: A
Length: 56 amino acids
Theoretical weight: 6.52 KDa
Source organism: Homo sapiens
Expression system: Not provided
UniProt:
  • Canonical: Q86TM6 (Residues: 279-334; Coverage: 9%)
Gene names: HRD1, KIAA1810, SYVN1
Sequence domains: Ring finger domain

Ligands and Environments

1 bound ligand:
Ligand ZN 2 x ZN
No modified residues

Experiments and Validation Details

Entry percentile scores
Chemical shift assignment: 7%
Refinement method: torsion angle dynamics
Expression system: Not provided

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