› 6avv

X-ray diffraction
1.51Å resolution

Crystal structure of Arabidopsis thaliana SOBER1

Released:
DOI: 10.2210/pdb6avv/pdb
PDB entry 6avv coloured by chain, front view.
PDB entry 6avv coloured by chain, side view.
PDB entry 6avv coloured by chain, top view.
Source organism: Arabidopsis thaliana
Primary publication:
A hydrophobic anchor mechanism defines a deacetylase family that suppresses host response against YopJ effectors.
Bürger M, Willige BC, Chory J
Nat Commun 8 2201 (2017)
PMID: 29259199

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-183071 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Carboxylesterase SOBER1 Chain: A
Molecule details ›
Chain: A
Length: 230 amino acids
Theoretical weight: 25.02 KDa
Source organism: Arabidopsis thaliana
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q84WK4 (Residues: 1-228; Coverage: 100%)
Gene names: At4g22305, SOBER1
Sequence domains: Phospholipase/Carboxylesterase

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ALS BEAMLINE 8.2.1
Spacegroup: P212121
Unit cell:
a: 45.76Å b: 52.29Å c: 74.23Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.17 0.169 0.196
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

4 review citations

Function of membrane domains in rho-of-plant signaling.
Smokvarska et al. (2021)
3 more

3 mentions without citation

Structural and chemical biology of deacetylases for carbohydrates, proteins, small molecules and histones.
Bürger et al. (2018)
2 more