6b2z

Electron Microscopy
3.6Å resolution

Cryo-EM structure of the dimeric FO region of yeast mitochondrial ATP synthase

Released:
Primary publication:
Atomic model for the dimeric FO region of mitochondrial ATP synthase.
Science 358 936-940 (2017)
PMID: 29074581
Related structures: EMD-7036

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero 38-mer (preferred)
PDBe Complex ID:
PDB-CPX-133642 (preferred)
Entry contents:
10 distinct polypeptide molecules
Macromolecules (10 distinct):
ATP synthase subunit 9, mitochondrial Chains: 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, B, C, D, E, F, G, H, I, J, K
Molecule details ›
Chains: 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, B, C, D, E, F, G, H, I, J, K
Length: 76 amino acids
Theoretical weight: 7.76 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P61829 (Residues: 1-76; Coverage: 100%)
Gene names: ATP9, OLI1, OLI3, PHO2, Q0130
Sequence domains: ATP synthase subunit C
Structure domains: F1F0 ATP synthase subunit C
ATP synthase protein 8 Chains: A, L
Molecule details ›
Chains: A, L
Length: 48 amino acids
Theoretical weight: 5.83 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P00856 (Residues: 1-48; Coverage: 100%)
Gene names: AAP1, ATP8, Q0080
Sequence domains: Fungal ATP synthase protein 8 (A6L)
ATP synthase subunit a Chains: M, a
Molecule details ›
Chains: M, a
Length: 249 amino acids
Theoretical weight: 27.9 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P00854 (Residues: 11-259; Coverage: 96%)
Gene names: ATP6, OLI2, OLI4, PHO1, Q0085
Sequence domains: ATP synthase A chain
ATP synthase subunit 4, mitochondrial Chains: N, b
Molecule details ›
Chains: N, b
Length: 209 amino acids
Theoretical weight: 23.19 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P05626 (Residues: 36-244; Coverage: 86%)
Gene names: ATP4, LPF7C, YPL078C
Sequence domains: Mitochondrial ATP synthase B chain precursor (ATP-synt_B)
ATP synthase subunit d, mitochondrial Chains: O, d
Molecule details ›
Chains: O, d
Length: 173 amino acids
Theoretical weight: 19.71 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P30902 (Residues: 2-174; Coverage: 99%)
Gene names: ATP7, YKL016C
Sequence domains: ATP synthase D chain, mitochondrial (ATP5H)
ATP synthase subunit e, mitochondrial Chains: P, e
Molecule details ›
Chains: P, e
Length: 49 amino acids
Theoretical weight: 4.19 KDa
Source organism: Saccharomyces cerevisiae S288C
ATP synthase subunit f, mitochondrial Chains: Q, f
Molecule details ›
Chains: Q, f
Length: 95 amino acids
Theoretical weight: 10.58 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: Q06405 (Residues: 7-101; Coverage: 94%)
Gene names: ATP17, D9481.21, YDR377W
Sequence domains: Mitochondrial F1-F0 ATP synthase subunit F of fungi
ATP synthase subunit g Chains: R, g
Molecule details ›
Chains: R, g
Length: 106 amino acids
Theoretical weight: 9.04 KDa
Source organism: Saccharomyces cerevisiae
ATP synthase subunit J, mitochondrial Chains: S, i
Molecule details ›
Chains: S, i
Length: 59 amino acids
Theoretical weight: 6.7 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P81450 (Residues: 1-59; Coverage: 100%)
Gene names: ATP18, YML081BC, YML081C-A
Sequence domains: ATP synthase j chain
ATP synthase subunit K, mitochondrial Chains: T, k
Molecule details ›
Chains: T, k
Length: 68 amino acids
Theoretical weight: 7.55 KDa
Source organism: Saccharomyces cerevisiae S288C
UniProt:
  • Canonical: P81451 (Residues: 1-68; Coverage: 100%)
Gene names: ATP19, YOL077W-A, YOL078BW
Sequence domains: ATP synthase subunit K

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.6Å
Relevant EMDB volumes: EMD-7036