› 6ckg

X-ray diffraction
2Å resolution

D-glycerate 3-kinase from Cryptococcus neoformans var. grubii serotype A (H99 / ATCC 208821 / CBS 10515 / FGSC 9487)

Released:
DOI: 10.2210/pdb6ckg/pdb
PDB entry 6ckg coloured by chain, front view.
PDB entry 6ckg coloured by chain, side view.
PDB entry 6ckg coloured by chain, top view.
Source organism: Cryptococcus neoformans var. grubii H99
Entry authors: Horanyi PS, Abendroth J, Lorimer DD, Edwards TE, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Function and Biology Details

Reaction catalysed: 
ATP + D-glycerate = ADP + 3-phospho-D-glycerate
Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-125432 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
D-glycerate 3-kinase Chains: A, B
Molecule details ›
Chains: A, B
Length: 330 amino acids
Theoretical weight: 37.26 KDa
Source organism: Cryptococcus neoformans var. grubii H99
Expression system: Escherichia coli 'BL21-Gold(DE3)pLysS AG'
UniProt:
  • Canonical: J9VS00 (Residues: 1-322; Coverage: 100%)
Gene name: CNAG_07779

Ligands and Environments

1 bound ligand:
Ligand EDO 5 x EDO
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 21-ID-F
Spacegroup: P212121
Unit cell:
a: 85.74Å b: 87.76Å c: 103.11Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.18 0.179 0.225
Expression system: Escherichia coli 'BL21-Gold(DE3)pLysS AG'

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