› 6cny

X-ray diffraction
2.1Å resolution

2.3 Angstrom Structure of Phosphodiesterase treated Vivid (complex with FMN)

Released:
DOI: 10.2210/pdb6cny/pdb
PDB entry 6cny coloured by chain, front view.
PDB entry 6cny coloured by chain, side view.
PDB entry 6cny coloured by chain, top view.
Source organism: Neurospora crassa
Primary publication:
Conformational switching in the fungal light sensor Vivid.
Zoltowski BD, Schwerdtfeger C, Widom J, Loros JJ, Bilwes AM, Dunlap JC, Crane BR
Science 316 1054-7 (2007)
PMID: 17510367

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-189904 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
PAS domain-containing protein Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 151 amino acids
Theoretical weight: 17.25 KDa
Source organism: Neurospora crassa
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q9C3Y6 (Residues: 36-186; Coverage: 81%)
Gene names: G17A4.050, vvd
Sequence domains: PAS domain
Structure domains: PAS domain

Ligands and Environments

1 bound ligand:
Ligand FMN 4 x FMN
1 modified residue:
Ligand CSX 4 x CSX

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X25
Spacegroup: P21
Unit cell:
a: 64.12Å b: 80.57Å c: 64.11Å
α: 90° β: 90.02° γ: 90°
R-values:
R R work R free
0.164 0.163 0.204
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

67 review citations

Structure and signaling mechanism of Per-ARNT-Sim domains.
Möglich et al. (2009)
66 more

1 mention without citation

Automatic recognition of ligands in electron density by machine learning.
Kowiel et al. (2019)