6djl

X-ray diffraction
3.1Å resolution

Crystal structure of the Rab11 GEF SH3BP5 bound to nucleotide free Rab11A

Released:

Function and Biology Details

Reaction catalysed:
GTP + H(2)O = GDP + phosphate
Cellular component:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-129920 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Ras-related protein Rab-11A Chains: A, F, G, H
Molecule details ›
Chains: A, F, G, H
Length: 219 amino acids
Theoretical weight: 24.69 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: P62491 (Residues: 1-216; Coverage: 100%)
Gene names: RAB11, RAB11A
Sequence domains: Ras family
Structure domains: P-loop containing nucleotide triphosphate hydrolases
SH3 domain-binding protein 5 Chains: B, C, D, E
Molecule details ›
Chains: B, C, D, E
Length: 266 amino acids
Theoretical weight: 31.03 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: O60239 (Residues: 1-265; Coverage: 58%)
Gene names: SAB, SH3BP5
Sequence domains: SH3 domain-binding protein 5 (SH3BP5)

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: CLSI BEAMLINE 08ID-1
Spacegroup: I222
Unit cell:
a: 114.85Å b: 197.04Å c: 304.71Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.237 0.235 0.278
Expression system: Escherichia coli BL21