PDB 6dt1 structure summary ‹ Protein Data Bank in Europe (PDBe)

Function and Biology Details

Reaction catalysed:

(1a) ATP + [DNA ligase]-L-lysine = [DNA ligase]-N(6)-(5'-adenylyl)-L-lysine + diphosphate

Biochemical function:

metal ion binding

Biological process:

DNA recombination

Cellular component:

not assigned

Sequence domains:

Structure analysis Details

Assembly composition:

hetero tetramer (preferred)

Assembly name:

DNA ligase and DNA (preferred)

PDBe Complex ID:

PDB-CPX-119807 (preferred)

Entry contents:

1 distinct polypeptide molecule
3 distinct DNA molecules

Macromolecules (4 distinct):

DNA ligase Chains: A, E

Molecule details ›

Chains: A, E
Length: 507 amino acids
Theoretical weight: 57.54 KDa
Source organism: Escherichia virus T4
Expression system: Escherichia coli
UniProt:

Canonical: P00970 (Residues: 1-487; Coverage: 100%)

Gene name: 30
Sequence domains: ATP dependent DNA ligase domain

DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*TP*(DOC))-3') Chains: B, F

Molecule details ›

Chains: B, F
Length: 11 nucleotides
Theoretical weight: 3.35 KDa
Source organism: Escherichia virus T4
Expression system: Not provided

DNA (5'-D((AMP)*GP*TP*CP*GP*GP*AP*CP*TP*GP*AP*)-3') Chains: C, G

Molecule details ›

Chains: C, G
Length: 10 nucleotides
Theoretical weight: 3.09 KDa
Source organism: Escherichia virus T4
Expression system: Not provided

DNA (5'-D(*TP*CP*AP*GP*TP*CP*CP*GP*AP*CP*GP*AP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3') Chains: D, H

Molecule details ›

Chains: D, H
Length: 21 nucleotides
Theoretical weight: 6.39 KDa
Source organism: Escherichia virus T4
Expression system: Not provided