› 6dyx

X-ray diffraction
1.5Å resolution

Structure of VHH R419 isolated from a pre-immune phage display library

Released:
DOI: 10.2210/pdb6dyx/pdb
Model geometry
Fit model/data
PDB entry 6dyx coloured by chain, front view.
PDB entry 6dyx coloured by chain, side view.
PDB entry 6dyx coloured by chain, top view.
Source organism: Vicugna pacos
Primary publication:
Structure of a VHH isolated from a naïve phage display library.
White B, Huh I, Brooks CL
OpenAccess logo BMC Res Notes 12 154 (2019)
PMID: 30890176

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-232209 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
VHH R419 Chain: D
Molecule details ›
Chain: D
Length: 124 amino acids
Theoretical weight: 13.54 KDa
Source organism: Vicugna pacos
Expression system: Escherichia coli BL21(DE3)

Ligands and Environments

2 bound ligands:
Ligand SO4 2 x SO4
Ligand ACT 1 x ACT
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: CLSI BEAMLINE 08ID-1
Spacegroup: P6522
Unit cell:
a: 58.281Å b: 58.281Å c: 155.358Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.177 0.176 0.19
Expression system: Escherichia coli BL21(DE3)

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Citations

6 citation in other articles

Role of a noncanonical disulfide bond in the stability, affinity, and flexibility of a VHH specific for the Listeria virulence factor InlB.
Mendoza et al. (2020)
5 more

1 mention without citation

Structure of a VHH isolated from a naïve phage display library.
White et al. (2019)