› 6dzu

Electron Microscopy
3.3Å resolution

Mechanism of cellular recognition by PCV2

Released:
DOI: 10.2210/pdb6dzu/pdb
PDB entry 6dzu coloured by chain, front view.
PDB entry 6dzu coloured by chain, side view.
PDB entry 6dzu coloured by chain, top view.
Source organism: Porcine circovirus 2
Entry authors: Khayat R, Dhindwal S
Related structures: EMD-8939

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo 60-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-124167 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Putative capsid protein Chains: A1, A2, A3, A4, A5, A6, A7, A8, A9, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW, AX, AY, AZ, Aa, Ab, Ac, Ad, Ae, Af, Ag, Ah, Ai, Aj, Ak, Al, Am, An, Ao, Ap, Aq, Ar, As, At, Au, Av, Aw, Ax, Ay
Molecule details ›
Chains: A1, A2, A3, A4, A5, A6, A7, A8, A9, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU, AV, AW, AX, AY, AZ, Aa, Ab, Ac, Ad, Ae, Af, Ag, Ah, Ai, Aj, Ak, Al, Am, An, Ao, Ap, Aq, Ar, As, At, Au, Av, Aw, Ax, Ay
Length: 189 amino acids
Theoretical weight: 21.91 KDa
Source organism: Porcine circovirus 2
Expression system: Trichoplusia ni
UniProt:
  • Canonical: G0ZPJ2 (Residues: 43-231; Coverage: 81%)
Gene name: ORF2
Sequence domains: Circovirus capsid protein

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.3Å
Relevant EMDB volumes: EMD-8939
Expression system: Trichoplusia ni

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