› 6ifm

X-ray diffraction
2.8Å resolution

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
hetero decamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-120010 (preferred)
Entry contents:
2 distinct polypeptide molecules
2 distinct DNA molecules
Macromolecules (4 distinct):
tRNA(fMet)-specific endonuclease VapC Chains: A, C, E, G
Molecule details ›
Chains: A, C, E, G
Length: 132 amino acids
Theoretical weight: 14.96 KDa
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Expression system: Escherichia coli
UniProt:
  • Canonical: Q8ZM86 (Residues: 1-132; Coverage: 100%)
Gene names: STM3033, vapC
Sequence domains: PIN domain
Antitoxin VapB Chains: B, D, F, H
Molecule details ›
Chains: B, D, F, H
Length: 68 amino acids
Theoretical weight: 7.68 KDa
Source organism: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Expression system: Escherichia coli
UniProt:
  • Canonical: Q7CPV2 (Residues: 1-68; Coverage: 91%)
Gene names: STM3034, vapB
DNA forward (27-MER) Chain: M
Molecule details ›
Chain: M
Length: 27 nucleotides
Theoretical weight: 8.18 KDa
DNA backward (27-MER) Chain: N
Molecule details ›
Chain: N
Length: 27 nucleotides
Theoretical weight: 8.41 KDa

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL44XU
Spacegroup: P31
Unit cell:
a: 93.677Å b: 93.677Å c: 122.44Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.21 0.206 0.233
Expression system: Escherichia coli

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