› 6iip

X-ray diffraction
0.95Å resolution

Apo-form structure of the HRP3 PWWP domain

Released:
DOI: 10.2210/pdb6iip/pdb
PDB entry 6iip coloured by chain, front view.
PDB entry 6iip coloured by chain, side view.
PDB entry 6iip coloured by chain, top view.
Source organism: Homo sapiens
Primary publication:
Apo-form structure of the HRP3 PWWP domain
Wang Z, Tian W
Nucleic Acids Res. (2019)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-195202 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Hepatoma-derived growth factor-related protein 3 Chains: A, B
Molecule details ›
Chains: A, B
Length: 88 amino acids
Theoretical weight: 10.11 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q9Y3E1 (Residues: 8-94; Coverage: 43%)
Gene names: CGI-142, HDGF2, HDGFL3, HDGFRP3
Sequence domains: PWWP domain

Ligands and Environments

2 bound ligands:
Ligand MES 2 x MES
Ligand SO4 5 x SO4
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL19U1
Spacegroup: P212121
Unit cell:
a: 38.478Å b: 39.931Å c: 97.385Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.197 0.196 0.205
Expression system: Escherichia coli BL21(DE3)

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