› 6in4

X-ray diffraction
1.8Å resolution

Crystal structure of apo DAPK1 in the presence of 18-crown-6

Released:
DOI: 10.2210/pdb6in4/pdb
PDB entry 6in4 coloured by chain, front view.
PDB entry 6in4 coloured by chain, side view.
PDB entry 6in4 coloured by chain, top view.
Source organism: Homo sapiens
Entry authors: Yokoyama T, Kosaka Y, Matsumoto K, Kitakami R, Nabeshima Y, Mizuguchi M

Function and Biology Details

Reaction catalysed: 
ATP + a protein = ADP + a phosphoprotein
Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-156788 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Death-associated protein kinase 1 Chain: A
Molecule details ›
Chain: A
Length: 293 amino acids
Theoretical weight: 33.8 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: P53355 (Residues: 1-285; Coverage: 20%)
Gene names: DAPK, DAPK1
Sequence domains: Protein kinase domain

Ligands and Environments

1 bound ligand:
Ligand SO4 1 x SO4
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PHOTON FACTORY BEAMLINE BL-5A
Spacegroup: P212121
Unit cell:
a: 46.675Å b: 62.36Å c: 88.428Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.187 0.186 0.218
Expression system: Escherichia coli

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