› 6itx

X-ray diffraction
2.75Å resolution

Structure of the C-terminal head domain of the avian adenovirus EDSV fiber

Released:
DOI: 10.2210/pdb6itx/pdb
Model geometry
Fit model/data
PDB entry 6itx coloured by chain, front view.
PDB entry 6itx coloured by chain, side view.
PDB entry 6itx coloured by chain, top view.
Source organism: Duck adenovirus 1
Primary publication:
Unravelling the receptor binding property of egg drop syndrome virus (EDSV) from the crystal structure of EDSV fiber head.
Song Y, Wei Q, Liu Y, Feng H, Chen Y, Wang Y, Bai Y, Xing G, Deng R, Zhang G
Int J Biol Macromol 139 587-595 (2019)
PMID: 31381914

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-126730 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Fiber protein 1 C-terminal domain-containing protein Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 301 amino acids
Theoretical weight: 32.1 KDa
Source organism: Duck adenovirus 1
Expression system: Escherichia coli K-12
UniProt:
  • Canonical: O11424 (Residues: 377-643; Coverage: 42%)
Sequence domains:

Ligands and Environments

2 bound ligands:
Ligand GLN 5 x GLN
Ligand SO4 5 x SO4
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: ENRAF-NONIUS FR591
Spacegroup: P21
Unit cell:
a: 105.515Å b: 63.236Å c: 165.806Å
α: 90° β: 93.54° γ: 90°
R-values:
R R work R free
0.194 0.192 0.232
Expression system: Escherichia coli K-12

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Citations

2 mentions without citation

Adenovirus Structure: What Is New?
Gallardo et al. (2021)
1 more