6j3z

Electron Microscopy
3.6Å resolution

Structure of C2S1M1-type PSII-FCPII supercomplex from diatom

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero 59-mer (preferred)
PDBe Complex ID:
PDB-CPX-110443 (preferred)
Entry contents:
28 distinct polypeptide molecules
Macromolecules (28 distinct):
Photosystem II reaction center protein D1 Chains: A, a
Molecule details ›
Chains: A, a
Length: 344 amino acids
Theoretical weight: 38.18 KDa
Source organism: Chaetoceros gracilis
Photosystem II chlorophyll protein CP47 Chains: B, b
Molecule details ›
Chains: B, b
Length: 509 amino acids
Theoretical weight: 56.48 KDa
Source organism: Chaetoceros gracilis
Photosystem II chlorophyll protein CP43 Chains: C, c
Molecule details ›
Chains: C, c
Length: 471 amino acids
Theoretical weight: 51.95 KDa
Source organism: Chaetoceros gracilis
Photosystem II reaction center protein D2 Chains: D, d
Molecule details ›
Chains: D, d
Length: 351 amino acids
Theoretical weight: 39.07 KDa
Source organism: Chaetoceros gracilis
Cytochrome b559 subunit alpha Chains: E, e
Molecule details ›
Chains: E, e
Length: 84 amino acids
Theoretical weight: 9.51 KDa
Source organism: Chaetoceros gracilis
Cytochrome b559 subunit beta Chains: F, f
Molecule details ›
Chains: F, f
Length: 43 amino acids
Theoretical weight: 4.91 KDa
Source organism: Chaetoceros gracilis
Photosystem II reaction center protein H Chains: H, h
Molecule details ›
Chains: H, h
Length: 67 amino acids
Theoretical weight: 7.42 KDa
Source organism: Chaetoceros gracilis
UniProt:
  • Canonical: B7XBY7 (Residues: 1-67; Coverage: 100%)
Gene name: psbH
Sequence domains: Photosystem II 10 kDa phosphoprotein
Photosystem II reaction center protein I Chains: I, i
Molecule details ›
Chains: I, i
Length: 38 amino acids
Theoretical weight: 4.43 KDa
Source organism: Chaetoceros gracilis
Photosystem II reaction center protein J Chains: J, j
Molecule details ›
Chains: J, j
Length: 39 amino acids
Theoretical weight: 4.09 KDa
Source organism: Chaetoceros gracilis
Photosystem II reaction center protein K Chains: K, k
Molecule details ›
Chains: K, k
Length: 44 amino acids
Theoretical weight: 4.98 KDa
Source organism: Chaetoceros gracilis
Photosystem II reaction center protein L Chains: L, l
Molecule details ›
Chains: L, l
Length: 38 amino acids
Theoretical weight: 4.37 KDa
Source organism: Chaetoceros gracilis
Photosystem II reaction center protein M Chains: M, m
Molecule details ›
Chains: M, m
Length: 131 amino acids
Theoretical weight: 14.18 KDa
Source organism: Chaetoceros gracilis
Extrinsic protein in photosystem II Chains: O, o
Molecule details ›
Chains: O, o
Length: 248 amino acids
Theoretical weight: 26.76 KDa
Source organism: Chaetoceros gracilis
UniProt:
  • Canonical: B6ZHE8 (Residues: 60-307; Coverage: 85%)
Gene name: psbO
Sequence domains: Manganese-stabilising protein / photosystem II polypeptide
Photosystem II reaction center protein T Chains: T, t
Molecule details ›
Chains: T, t
Length: 31 amino acids
Theoretical weight: 3.71 KDa
Source organism: Chaetoceros gracilis
Photosystem II 12 kDa extrinsic protein Chains: U, u
Molecule details ›
Chains: U, u
Length: 93 amino acids
Theoretical weight: 10.14 KDa
Source organism: Chaetoceros gracilis
UniProt:
  • Canonical: B6ZHF0 (Residues: 59-151; Coverage: 68%)
Gene name: psbU
Sequence domains: Photosystem II 12 kDa extrinsic protein (PsbU)
Photosystem II extrinsic protein V Chains: V, v
Molecule details ›
Chains: V, v
Length: 137 amino acids
Theoretical weight: 14.89 KDa
Source organism: Chaetoceros gracilis
UniProt:
  • Canonical: B6ZHF4 (Residues: 27-163; Coverage: 84%)
Gene name: psbV
Sequence domains: Cytochrome c-550 domain
Photosystem II reaction center protein Ycf12 Chains: Y, y
Molecule details ›
Chains: Y, y
Length: 34 amino acids
Theoretical weight: 3.61 KDa
Source organism: Chaetoceros gracilis
Photosystem II reaction center protein X Chains: X, x
Molecule details ›
Chains: X, x
Length: 38 amino acids
Theoretical weight: 3.86 KDa
Source organism: Chaetoceros gracilis
UniProt:
  • Canonical: B6ZHF2 (Residues: 1-38; Coverage: 100%)
Gene name: psbX
Sequence domains: Photosystem II reaction centre X protein (PsbX)
Photosystem II reaction center protein Z Chains: Z, z
Molecule details ›
Chains: Z, z
Length: 61 amino acids
Theoretical weight: 6.53 KDa
Source organism: Chaetoceros gracilis
Extrinsic protein in photosystem II Chains: Q, q
Molecule details ›
Chains: Q, q
Length: 155 amino acids
Theoretical weight: 17.09 KDa
Source organism: Chaetoceros gracilis
UniProt:
  • Canonical: B6ZHE9 (Residues: 57-211; Coverage: 80%)
Gene name: psbQ'
Photosystem II reaction center protein W Chains: W, w
Molecule details ›
Chains: W, w
Length: 72 amino acids
Theoretical weight: 7.85 KDa
Source organism: Chaetoceros gracilis
Unknown protein 0 Chains: 0, 5
Molecule details ›
Chains: 0, 5
Length: 31 amino acids
Theoretical weight: 2.66 KDa
Source organism: Chaetoceros gracilis
Unknown protein 1 Chains: 1, 6
Molecule details ›
Chains: 1, 6
Length: 30 amino acids
Theoretical weight: 2.57 KDa
Source organism: Chaetoceros gracilis
Unknown protein 2 Chains: 2, 7
Molecule details ›
Chains: 2, 7
Length: 10 amino acids
Theoretical weight: 869 Da
Source organism: Chaetoceros gracilis
Fucoxanthin chlorophyll a/c-binding protein Lhcf1, FCP1 Chains: 11, 12, 13, 14, 15, 16, 17, 18
Molecule details ›
Chains: 11, 12, 13, 14, 15, 16, 17, 18
Length: 207 amino acids
Theoretical weight: 22.1 KDa
Source organism: Chaetoceros gracilis
Fucoxanthin chlorophyll a/c-binding protein monomer 1 Chain: 19
Molecule details ›
Chain: 19
Length: 215 amino acids
Theoretical weight: 18.32 KDa
Source organism: Chaetoceros gracilis
Fucoxanthin chlorophyll a/c-binding protein monomer 2 Chain: 20
Molecule details ›
Chain: 20
Length: 143 amino acids
Theoretical weight: 12.19 KDa
Source organism: Chaetoceros gracilis
Fucoxanthin chlorophyll a/c-binding protein monomer 3 Chain: 21
Molecule details ›
Chain: 21
Length: 155 amino acids
Theoretical weight: 13.21 KDa
Source organism: Chaetoceros gracilis

Ligands and Environments

Experiments and Validation Details

Entry percentile scores
Resolution: 3.6Å
Relevant EMDB volumes: EMD-9776