› 6j4g

X-ray diffraction
3Å resolution

Crystal structure of the AtWRKY33 domain

Released:
DOI: 10.2210/pdb6j4g/pdb
PDB entry 6j4g coloured by chain, front view.
PDB entry 6j4g coloured by chain, side view.
PDB entry 6j4g coloured by chain, top view.
Source organism: Arabidopsis thaliana
Entry authors: Xu YP, Xu H, Wang B, Su XD

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
hetero trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-120053 (preferred)
Entry contents:
1 distinct polypeptide molecule
2 distinct DNA molecules
Macromolecules (3 distinct):
Probable WRKY transcription factor 33 Chain: B
Molecule details ›
Chain: B
Length: 74 amino acids
Theoretical weight: 8.91 KDa
Source organism: Arabidopsis thaliana
Expression system: Escherichia coli
UniProt:
  • Canonical: Q8S8P5 (Residues: 178-242; Coverage: 13%)
Gene names: At2g38470, T19C21.4, WRKY33
Sequence domains: WRKY DNA -binding domain
DNA (5'-D(*AP*GP*CP*CP*TP*TP*TP*GP*AP*CP*CP*AP*GP*CP*G)-3') Chain: C
Molecule details ›
Chain: C
Length: 15 nucleotides
Theoretical weight: 4.57 KDa
Source organism: Arabidopsis thaliana
Expression system: Not provided
DNA (5'-D(*TP*CP*GP*CP*TP*GP*GP*TP*CP*AP*AP*AP*GP*GP*C)-3') Chain: D
Molecule details ›
Chain: D
Length: 15 nucleotides
Theoretical weight: 4.61 KDa
Source organism: Arabidopsis thaliana
Expression system: Not provided

Ligands and Environments

1 bound ligand:
Ligand ZN 1 x ZN
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL19U1
Spacegroup: P6522
Unit cell:
a: 97.9Å b: 97.9Å c: 94.3Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.208 0.204 0.246
Expression systems:
  • Escherichia coli
  • Not provided

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