› 6j4t

X-ray diffraction
1.82Å resolution

Crystal structure of arabidopsis ADAL complexed with IMP

Released:
DOI: 10.2210/pdb6j4t/pdb
Model geometry
Fit model/data
PDB entry 6j4t coloured by chain, front view.
PDB entry 6j4t coloured by chain, side view.
PDB entry 6j4t coloured by chain, top view.
Source organism: Arabidopsis thaliana
Primary publication:
Structure of Arabidopsis thaliana N6-methyl-AMP deaminase ADAL with bound GMP and IMP and implications for N6-methyl-AMP recognition and processing.
Wu B, Zhang D, Nie H, Shen S, Li Y, Li S
RNA Biol 16 1504-1512 (2019)
PMID: 31318636

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-185300 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
N6-mAMP deaminase Chain: A
Molecule details ›
Chain: A
Length: 355 amino acids
Theoretical weight: 40 KDa
Source organism: Arabidopsis thaliana
Expression system: Escherichia coli
UniProt:
  • Canonical: Q8LPL7 (Residues: 1-355; Coverage: 100%)
Gene names: ADAL, At4g04880, MAPDA
Sequence domains: Adenosine deaminase

Ligands and Environments

2 bound ligands:
Ligand IMP 1 x IMP
Ligand ZN 1 x ZN
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: SSRF BEAMLINE BL19U1
Spacegroup: P212121
Unit cell:
a: 50.63Å b: 81.921Å c: 87.15Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.19 0.187 0.229
Expression system: Escherichia coli

Quick links

Citations

5 citation in other articles

Structural basis for the substrate specificity and catalytic features of pseudouridine kinase from Arabidopsis thaliana.
Kim et al. (2021)
4 more

1 mention without citation

Structure of Arabidopsis thaliana N6-methyl-AMP deaminase ADAL with bound GMP and IMP and implications for N6-methyl-AMP recognition and processing.
Wu et al. (2019)