› 6jbg

X-ray diffraction
3.1Å resolution

Crystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neamine analog (equatorial 4'-F)

Released:
DOI: 10.2210/pdb6jbg/pdb
PDB entry 6jbg coloured by chain, front view.
PDB entry 6jbg coloured by chain, side view.
PDB entry 6jbg coloured by chain, top view.
Source organism: synthetic construct
Entry authors: Kanazawa H, Auffinger P, Hanessian S, Kondo J

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-197102 (preferred)
Entry contents:
2 distinct RNA molecules
Macromolecules (2 distinct):
RNA (5'-R(P*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') Chains: A, B
Molecule details ›
Chains: A, B
Length: 22 nucleotides
Theoretical weight: 7.06 KDa
Source organism: synthetic construct
Expression system: Not provided
RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3') Chains: C, D
Molecule details ›
Chains: C, D
Length: 23 nucleotides
Theoretical weight: 7.37 KDa
Source organism: synthetic construct
Expression system: Not provided

Ligands and Environments

1 bound ligand:
Ligand S81 1 x S81
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PHOTON FACTORY BEAMLINE BL-17A
Spacegroup: P21
Unit cell:
a: 28.382Å b: 83.72Å c: 51.444Å
α: 90° β: 95.1° γ: 90°
R-values:
R R work R free
0.167 0.161 0.225
Expression system: Not provided

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