6jid

X-ray diffraction
2.5Å resolution

Human MTHFD2 in complex with Compound 1

Released:

Function and Biology Details

Reactions catalysed:
5,10-methylenetetrahydrofolate + NAD(+) = 5,10-methenyltetrahydrofolate + NADH
5,10-methenyltetrahydrofolate + H(2)O = 10-formyltetrahydrofolate
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
PDBe Complex ID:
PDB-CPX-146835 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial Chains: A, B
Molecule details ›
Chains: A, B
Length: 323 amino acids
Theoretical weight: 35.22 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: P13995 (Residues: 36-338; Coverage: 87%)
Gene names: MTHFD2, NMDMC
Sequence domains:

Ligands and Environments

3 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PHOTON FACTORY BEAMLINE BL-17A
Spacegroup: P65
Unit cell:
a: 116.48Å b: 116.48Å c: 113.21Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.203 0.2 0.26
Expression system: Escherichia coli