› 6joj

X-ray diffraction
2.6Å resolution

Crystal structure of PDGFRA T674I in complex with crenolanib by soaking

Released:
DOI: 10.2210/pdb6joj/pdb
PDB entry 6joj coloured by chain, front view.
PDB entry 6joj coloured by chain, side view.
PDB entry 6joj coloured by chain, top view.
Source organism: Homo sapiens
Entry authors: Liang L, Yan XE, Yun CH

Function and Biology Details

Reaction catalysed: 
ATP + a [protein]-L-tyrosine = ADP + a [protein]-L-tyrosine phosphate
Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-147663 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Platelet-derived growth factor receptor alpha Chain: A
Molecule details ›
Chain: A
Length: 356 amino acids
Theoretical weight: 40.59 KDa
Source organism: Homo sapiens
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: P16234 (Residues: 550-973; Coverage: 33%)
Gene names: PDGFR2, PDGFRA, RHEPDGFRA
Sequence domains: Protein tyrosine and serine/threonine kinase

Ligands and Environments

3 bound ligands:
Ligand 6T2 1 x 6T2
Ligand SO4 2 x SO4
Ligand CL 7 x CL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL19U1
Spacegroup: P3121
Unit cell:
a: 100.556Å b: 100.556Å c: 110.987Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.224 0.224 0.233
Expression system: Spodoptera frugiperda

Quick links