6jto

X-ray diffraction
1.7Å resolution

Crystal structure of HLA-C05 in complex with a tumor mut10m peptide

Released:
Source organism: Homo sapiens

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero trimer (preferred)
PDBe Complex ID:
PDB-CPX-133996 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (3 distinct):
HLA class I histocompatibility antigen, C alpha chain Chain: A
Molecule details ›
Chain: A
Length: 273 amino acids
Theoretical weight: 31.78 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli K-12
UniProt:
  • Canonical: P10321 (Residues: 26-298; Coverage: 80%)
Gene names: HLA-C, HLAC
Sequence domains:
Beta-2-microglobulin Chain: B
Molecule details ›
Chain: B
Length: 98 amino acids
Theoretical weight: 11.62 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli K-12
UniProt:
  • Canonical: P61769 (Residues: 21-118; Coverage: 99%)
Gene names: B2M, CDABP0092, HDCMA22P
Sequence domains: Immunoglobulin C1-set domain
GTPase KRas, N-terminally processed Chain: C
Molecule details ›
Chain: C
Length: 10 amino acids
Theoretical weight: 875 Da
Source organism: Homo sapiens
Expression system: Not provided
UniProt:
  • Canonical: P01116 (Residues: 10-19; Coverage: 5%)
Gene names: KRAS, KRAS2, RASK2

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL17U1
Spacegroup: P212121
Unit cell:
a: 69.36Å b: 76.33Å c: 84.62Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.18 0.179 0.208
Expression systems:
  • Escherichia coli K-12
  • Not provided