6kn0

X-ray diffraction
2.79Å resolution

caspase-1 P20/P10 C285A in complex with human GSDMD-C domain

Released:

Function and Biology Details

Reaction catalysed:
Strict requirement for an Asp residue at position P1 and has a preferred cleavage sequence of Tyr-Val-Ala-Asp-|-.
Biochemical function:
Biological process:
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero trimer (preferred)
PDBe Complex ID:
PDB-CPX-151485 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (3 distinct):
Caspase-1 subunit p20 Chains: A, C
Molecule details ›
Chains: A, C
Length: 167 amino acids
Theoretical weight: 18.78 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P29466 (Residues: 131-297; Coverage: 41%)
Gene names: CASP1, IL1BC, IL1BCE
Sequence domains: Caspase domain
Caspase-1 subunit p10 Chains: B, D
Molecule details ›
Chains: B, D
Length: 88 amino acids
Theoretical weight: 10.26 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P29466 (Residues: 317-404; Coverage: 22%)
Gene names: CASP1, IL1BC, IL1BCE
Sequence domains: Caspase domain
Gasdermin-D, C-terminal Chains: E, F
Molecule details ›
Chains: E, F
Length: 198 amino acids
Theoretical weight: 21.25 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P57764 (Residues: 283-480; Coverage: 41%)
Gene names: DFNA5L, FKSG10, GSDMD, GSDMDC1
Sequence domains: Gasdermin PUB domain

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL17U
Spacegroup: C2
Unit cell:
a: 141.039Å b: 94.894Å c: 76.081Å
α: 90° β: 116.43° γ: 90°
R-values:
R R work R free
0.246 0.24 0.3
Expression system: Escherichia coli BL21(DE3)