6lz4

X-ray diffraction
2.49Å resolution

Crystal structure of PMab-1 Fv-clasp fragment with its antigen peptide

Released:
Model geometry
Fit model/data

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero trimer (preferred)
PDBe Complex ID:
PDB-CPX-280222 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (3 distinct):
PMab-1 VH(S112C)-SARAH Chimera Chains: A, D
Molecule details ›
Chains: A, D
Length: 168 amino acids
Theoretical weight: 19.16 KDa
Source organism: Rattus norvegicus
Expression system: Escherichia coli
PMab-1 VL-SARAH(S37C) Chimera Chains: B, E
Molecule details ›
Chains: B, E
Length: 163 amino acids
Theoretical weight: 18.42 KDa
Source organism: Rattus norvegicus
Expression system: Escherichia coli
Podoplanin Chains: C, F

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: SPRING-8 BEAMLINE BL44XU
Spacegroup: P212121
Unit cell:
a: 67.652Å b: 85.088Å c: 115.662Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.246 0.245 0.269
Expression systems:
  • Escherichia coli
  • Not provided