› 6mbd

X-ray diffraction
1.95Å resolution

Human Mcl-1 in complex with the designed peptide dM1

Released:
DOI: 10.2210/pdb6mbd/pdb
PDB entry 6mbd coloured by chain, front view.
PDB entry 6mbd coloured by chain, side view.
PDB entry 6mbd coloured by chain, top view.
Source organisms:
Primary publication:
Tertiary Structural Motif Sequence Statistics Enable Facile Prediction and Design of Peptides that Bind Anti-apoptotic Bfl-1 and Mcl-1.
Frappier V, Jenson JM, Zhou J, Grigoryan G, Keating AE
Structure 27 606-617.e5 (2019)
PMID: 30773399

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-167060 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Induced myeloid leukemia cell differentiation protein Mcl-1 Chains: A, B
Molecule details ›
Chains: A, B
Length: 155 amino acids
Theoretical weight: 17.69 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q07820 (Residues: 172-324; Coverage: 44%)
Gene names: BCL2L3, MCL1
Sequence domains: Apoptosis regulator proteins, Bcl-2 family
Structure domains: Blc2-like
dM1 Chains: C, D
Molecule details ›
Chains: C, D
Length: 25 amino acids
Theoretical weight: 2.63 KDa
Source organism: synthetic construct
Expression system: Not provided

Ligands and Environments

1 bound ligand:
Ligand ZN 6 x ZN
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: OTHER
Spacegroup: P212121
Unit cell:
a: 64.792Å b: 69.733Å c: 84.853Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.199 0.196 0.24
Expression systems:
  • Escherichia coli
  • Not provided

Quick links

Citations

4 review citations

Recent advances in de novo protein design: Principles, methods, and applications.
Pan et al. (2021)
3 more

1 mention without citation

Tertiary Structural Motif Sequence Statistics Enable Facile Prediction and Design of Peptides that Bind Anti-apoptotic Bfl-1 and Mcl-1.
Frappier et al. (2019)