› 6mj0

X-ray diffraction
3.1Å resolution

Crystal structure of the complete turnip yellow mosaic virus 3'UTR

Released:
DOI: 10.2210/pdb6mj0/pdb
PDB entry 6mj0 coloured by chain, front view.
PDB entry 6mj0 coloured by chain, side view.
PDB entry 6mj0 coloured by chain, top view.
Source organism: Turnip yellow mosaic virus
Primary publication:
Ribosome-induced RNA conformational changes in a viral 3'-UTR sense and regulate translation levels.
Hartwick EW, Costantino DA, MacFadden A, Nix JC, Tian S, Das R, Kieft JS
Nat Commun 9 5074 (2018)
PMID: 30498211

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
PDBe Complex ID:
PDB-CPX-195864 (preferred)
Entry contents:
1 distinct RNA molecule
Macromolecule:
RNA (101-MER) Chains: A, B
Molecule details ›
Chains: A, B
Length: 104 nucleotides
Theoretical weight: 33.32 KDa
Source organism: Turnip yellow mosaic virus
Expression system: Not provided
Sequence domains:
  • UPSK RNA
  • Tymovirus/Pomovirus/Furovirus tRNA-like 3' UTR element

    • Ligands and Environments

    No bound ligands
    No modified residues

    Experiments and Validation Details

    Entry percentile scores
    X-ray source: ALS BEAMLINE 4.2.2
    Spacegroup: I222
    Unit cell:
    a: 103.032Å b: 129.126Å c: 172.005Å
    α: 90° β: 90° γ: 90°
    R-values:
    R R work R free
    0.23 0.227 0.266
    Expression system: Not provided

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    Citations

    1 review citation

    Alternative Polyadenylation Is a Novel Strategy for the Regulation of Gene Expression in Response to Stresses in Plants.
    Wu et al. (2023)
    9 other articles

    7 mentions without citation

    Interactions of the Receptor Binding Domain of SARS-CoV-2 Variants with hACE2: Insights from Molecular Docking Analysis and Molecular Dynamic Simulation.
    Celik et al. (2021)
    6 more