6nff

X-ray diffraction
2Å resolution

Structure of X-prolyl dipeptidyl aminopeptidase from Lactobacillus helveticus

Released:
Source organism: Lactobacillus helveticus
Primary publication:
Structural characterization of a prolyl aminodipeptidase (PepX) from Lactobacillus helveticus.
Acta Crystallogr F Struct Biol Commun 75 625-633 (2019)
PMID: 31584010

Function and Biology Details

Reaction catalysed:
Hydrolyzes Xaa-Pro-|- bonds to release unblocked, N-terminal dipeptides from substrates including Ala-Pro-|-p-nitroanilide and (sequentially) Tyr-Pro-|-Phe-Pro-|-Gly-Pro-|-Ile.
Biochemical function:
Biological process:
Cellular component:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
PDBe Complex ID:
PDB-CPX-176801 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Xaa-Pro dipeptidyl-peptidase Chain: A
Molecule details ›
Chain: A
Length: 813 amino acids
Theoretical weight: 92.64 KDa
Source organism: Lactobacillus helveticus
Expression system: Escherichia coli
UniProt:
  • Canonical: Q59485 (Residues: 1-793; Coverage: 100%)
Gene name: pepX
Sequence domains:

Ligands and Environments

3 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: OXFORD DIFFRACTION NOVA
Spacegroup: P43212
Unit cell:
a: 154.63Å b: 154.63Å c: 106.594Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.238 0.236 0.273
Expression system: Escherichia coli