6ogz

Electron Microscopy
3.6Å resolution

In situ structure of Rotavirus RNA-dependent RNA polymerase at transcript-elongated state

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero tridecamer (preferred)
PDBe Complex ID:
PDB-CPX-124164 (preferred)
Entry contents:
2 distinct polypeptide molecules
2 distinct RNA molecules
Macromolecules (4 distinct):
RNA-directed RNA polymerase Chain: A
Inner capsid protein VP2 Chains: E, F, G, H, I, J, K, L, M, N
Molecule details ›
Chains: E, F, G, H, I, J, K, L, M, N
Length: 887 amino acids
Theoretical weight: 103.43 KDa
Source organism: Rotavirus A
UniProt:
  • Canonical: G0YZK0 (Residues: 1-887; Coverage: 100%)
Gene name: VP2
Sequence domains: Rotavirus VP2 protein
RNA (5'-R(P*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*A)-3') Chain: B
Molecule details ›
Chain: B
Length: 18 nucleotides
Theoretical weight: 5.67 KDa
RNA (5'-R(P*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*AP*UP*A)-3') Chain: C
Molecule details ›
Chain: C
Length: 17 nucleotides
Theoretical weight: 5.37 KDa

Ligands and Environments

2 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.6Å
Relevant EMDB volumes: EMD-20060