› 6pel

X-ray diffraction
3.19Å resolution

Crystal structure of bovine opsin with citronellol bound

Released:
DOI: 10.2210/pdb6pel/pdb
Model geometry
Fit model/data
PDB entry 6pel coloured by chain, front view.
PDB entry 6pel coloured by chain, side view.
PDB entry 6pel coloured by chain, top view.
Source organism: Bos taurus
Entry authors: Eger BT, Morizumi T, Ernst OP

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-136076 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (3 distinct):
Rhodopsin Chain: A
Molecule details ›
Chain: A
Length: 348 amino acids
Theoretical weight: 39.03 KDa
Source organism: Bos taurus
UniProt:
  • Canonical: P02699 (Residues: 1-348; Coverage: 100%)
Gene name: RHO
Sequence domains:
ILENLKDVGLF G alpha peptide CT2 Chain: B
Molecule details ›
Chain: B
Length: 11 amino acids
Theoretical weight: 1.26 KDa
Source organism: Bos taurus
Expression system: Not provided

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG, BMA
Carbohydrate polymer
3 bound ligands:
Ligand ODM 1 x ODM
Ligand BOG 1 x BOG
Ligand PLM 1 x PLM
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: APS BEAMLINE 23-ID-B
Spacegroup: R32
Unit cell:
a: 243.412Å b: 243.412Å c: 108.44Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.214 0.212 0.248
Expression system: Not provided

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