› 6ppi

Electron Microscopy
4.7Å resolution

Kaposi's sarcoma-associated herpesvirus (KSHV), C12 portal dodecamer structure

Released:
DOI: 10.2210/pdb6ppi/pdb
PDB entry 6ppi coloured by chain, front view.
PDB entry 6ppi coloured by chain, side view.
PDB entry 6ppi coloured by chain, top view.
Source organism: Human herpesvirus 8 strain GK18
Primary publication:
DNA-Packing Portal and Capsid-Associated Tegument Complexes in the Tumor Herpesvirus KSHV.
Gong D, Dai X, Jih J, Liu YT, Bi GQ, Sun R, Zhou ZH
Cell 178 1329-1343.e12 (2019)
PMID: 31447177
Related structures: EMD-20437

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
Cellular component:
Sequence domain:

Structure analysis Details

Assembly composition:
homo dodecamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-123580 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Portal protein Chains: A, B, C, D, E, F, G, H, I, J, K, L
Molecule details ›
Chains: A, B, C, D, E, F, G, H, I, J, K, L
Length: 605 amino acids
Theoretical weight: 68.09 KDa
Source organism: Human herpesvirus 8 strain GK18
UniProt:
  • Canonical: F5HGK9 (Residues: 1-605; Coverage: 100%)
Gene name: ORF43
Sequence domains: Herpesvirus UL6 like

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 4.7Å
Relevant EMDB volumes: EMD-20437

Quick links

Citations

5 review citations

The remarkable viral portal vertex: structure and a plausible model for mechanism.
Rao et al. (2021)
4 more

4 mentions without citation

Extracytoplasmic Function σ Factors as Tools for Coordinating Stress Responses.
de Dios et al. (2021)
3 more