6py2

X-ray diffraction
2.83Å resolution

HLA-TCR complex

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero pentamer (preferred)
PDBe Complex ID:
PDB-CPX-102772 (preferred)
Entry contents:
5 distinct polypeptide molecules
Macromolecules (5 distinct):
Ig-like domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 254 amino acids
Theoretical weight: 27.96 KDa
Source organism: Homo sapiens
Expression system: Baculovirus expression vector pFastBac1-HM
UniProt:
  • Canonical: Q08AS3 (Residues: 1-254; Coverage: 100%)
Gene name: HLA-DQA1
Sequence domains:
Ig-like domain-containing protein Chain: B
Molecule details ›
Chain: B
Length: 261 amino acids
Theoretical weight: 29.71 KDa
Source organism: Homo sapiens
Expression system: Baculovirus expression vector pFastBac1-HM
UniProt:
  • Canonical: A0A0U5IHY9 (Residues: 1-261; Coverage: 100%)
Gene name: HLA-DQB1
Sequence domains:
Glutenin, low molecular weight subunit PTDUCD1 Chain: C
Molecule details ›
Chain: C
Length: 12 amino acids
Theoretical weight: 1.3 KDa
Source organism: Triticum aestivum
Expression system: Not provided
UniProt:
  • Canonical: P16315 (Residues: 77-86; Coverage: 4%)
Ig-like domain-containing protein Chain: D
Molecule details ›
Chain: D
Length: 206 amino acids
Theoretical weight: 22.7 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: K7N5N2 (Residues: 1-82, 83-207; Coverage: 99%)
Sequence domains:
Ig-like domain-containing protein Chain: E
Molecule details ›
Chain: E
Length: 245 amino acids
Theoretical weight: 27.42 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: K7N5M4 (Residues: 7-40, 41-55, 56-249; Coverage: 92%)
Gene names: B2M, HDCMA22P
Sequence domains:

Ligands and Environments

2 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: AUSTRALIAN SYNCHROTRON BEAMLINE MX2
Spacegroup: C2221
Unit cell:
a: 75.28Å b: 275.14Å c: 141.55Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.217 0.216 0.244
Expression systems:
  • Baculovirus expression vector pFastBac1-HM
  • Not provided
  • Escherichia coli BL21