› 6qhj

X-ray diffraction
1.25Å resolution

High-resolution crystal structure of calcium- and sodium-bound mouse Olfactomedin-1 beta-propeller domain

Released:
DOI: 10.2210/pdb6qhj/pdb
PDB entry 6qhj coloured by chain, front view.
PDB entry 6qhj coloured by chain, side view.
PDB entry 6qhj coloured by chain, top view.
Source organism: Homo sapiens
Primary publication:
Design and structural characterisation of olfactomedin-1 variants as tools for functional studies.
Pronker MF, van den Hoek H, Janssen BJC
BMC Mol Cell Biol 20 50 (2019)
PMID: 31726976

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-189268 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Noelin Chain: A
Molecule details ›
Chain: A
Length: 264 amino acids
Theoretical weight: 30.18 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: Q99784 (Residues: 226-478; Coverage: 54%)
Gene names: NOE1, NOEL1, OLFM1
Sequence domains: Olfactomedin-like domain

Ligands and Environments

4 bound ligands:
Ligand NAG 4 x NAG
Ligand CA 1 x CA
Ligand NA 1 x NA
Ligand GOL 2 x GOL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE MASSIF-3
Spacegroup: I222
Unit cell:
a: 61.794Å b: 79.631Å c: 111.719Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.125 0.124 0.141
Expression system: Homo sapiens

Quick links

Citations

1 mention without citation

Design and structural characterisation of olfactomedin-1 variants as tools for functional studies.
Pronker et al. (2019)