› 6qt9

Electron Microscopy
3.8Å resolution

Cryo-EM structure of SH1 full particle.

Released:
DOI: 10.2210/pdb6qt9/pdb
PDB entry 6qt9 coloured by chain, front view.
PDB entry 6qt9 coloured by chain, side view.
PDB entry 6qt9 coloured by chain, top view.
Source organism: Haloarcula hispanica virus SH1
Primary publication:
Assembly of complex viruses exemplified by a halophilic euryarchaeal virus.
De Colibus L, Roine E, Walter TS, Ilca SL, Wang X, Wang N, Roseman AM, Bamford D, Huiskonen JT, Stuart DI
Nat Commun 10 1456 (2019)
PMID: 30926810
Related structures: EMD-4633

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero 1800-mer (preferred)
PDBe Complex ID:
PDB-CPX-167339 (preferred)
Entry contents:
8 distinct polypeptide molecules
Macromolecules (8 distinct):
ORF 25 Chains: A, D
Molecule details ›
Chains: A, D
Length: 226 amino acids
Theoretical weight: 25.04 KDa
Source organism: Haloarcula hispanica virus SH1
UniProt:
  • Canonical: Q4KPG2 (Residues: 7-232; Coverage: 97%)
ORF 25 Chains: C, E, F, G, H, I, J, K, L, M
Molecule details ›
Chains: C, E, F, G, H, I, J, K, L, M
Length: 225 amino acids
Theoretical weight: 24.91 KDa
Source organism: Haloarcula hispanica virus SH1
UniProt:
  • Canonical: Q4KPG2 (Residues: 8-232; Coverage: 97%)
ORF 24 Chains: a, b, c, d, e, f, i, j, k, m, o
Molecule details ›
Chains: a, b, c, d, e, f, i, j, k, m, o
Length: 173 amino acids
Theoretical weight: 18.84 KDa
Source organism: Haloarcula hispanica virus SH1
UniProt:
  • Canonical: Q4KPG3 (Residues: 2-174; Coverage: 94%)
ORF 24 Chains: g, l, n
Molecule details ›
Chains: g, l, n
Length: 167 amino acids
Theoretical weight: 18.27 KDa
Source organism: Haloarcula hispanica virus SH1
UniProt:
  • Canonical: Q4KPG3 (Residues: 8-174; Coverage: 90%)
ORF 24 Chain: h
Molecule details ›
Chain: h
Length: 175 amino acids
Theoretical weight: 19.04 KDa
Source organism: Haloarcula hispanica virus SH1
UniProt:
  • Canonical: Q4KPG3 (Residues: 2-176; Coverage: 95%)
ORF 31 Chain: Y
Molecule details ›
Chain: Y
Length: 135 amino acids
Theoretical weight: 14.98 KDa
Source organism: Haloarcula hispanica virus SH1
UniProt:
  • Canonical: Q4KPF6 (Residues: 14-148; Coverage: 91%)
VP12 Chain: X
Molecule details ›
Chain: X
Length: 24 amino acids
Theoretical weight: 2.06 KDa
Source organism: Haloarcula hispanica virus SH1
VP13 Chain: W
Molecule details ›
Chain: W
Length: 80 amino acids
Theoretical weight: 6.83 KDa
Source organism: Haloarcula hispanica virus SH1

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.8Å
Relevant EMDB volumes: EMD-4633

Quick links

Citations

5 review citations

Global Organization and Proposed Megataxonomy of the Virus World.
Koonin et al. (2020)
4 more

3 mentions without citation

Structures of enveloped virions determined by cryogenic electron microscopy and tomography.
Stass et al. (2019)
2 more