6r0l

X-ray diffraction
2.7Å resolution

Histone fold domain of OsGhd8/NF-YC7 in I2

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-170969 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Nuclear transcription factor Y subunit B-11 Chain: A
Molecule details ›
Chain: A
Length: 88 amino acids
Theoretical weight: 10.09 KDa
Source organism: Oryza sativa
Expression system: Escherichia coli
UniProt:
  • Canonical: Q0J7P4 (Residues: 60-147; Coverage: 30%)
Gene names: DTH8, GHD8, HAP3H, HD5, LOC_Os08g07740, NFYB11, Os08g0174500
Sequence domains: Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Nuclear transcription factor Y subunit C-6 Chain: B
Molecule details ›
Chain: B
Length: 77 amino acids
Theoretical weight: 8.81 KDa
Source organism: Oryza sativa
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9XE33 (Residues: 92-168; Coverage: 38%)
Gene names: B1142B04.32, HAP5D, LOC_Os08g38780, NFYC6, Os08g0496500, P0026F07.3
Sequence domains: Core histone H2A/H2B/H3/H4

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID30B
Unit cell:
a: 65.836Å b: 34.102Å c: 67.081Å
α: 90° β: 95.39° γ: 90°
R-values:
R R work R free
0.259 0.258 0.276
Expression system: Escherichia coli