› 6r8c

X-ray diffraction
1.92Å resolution

HIV capsid hexamer with IP5 ligand

Released:
DOI: 10.2210/pdb6r8c/pdb
PDB entry 6r8c coloured by chain, front view.
PDB entry 6r8c coloured by chain, side view.
PDB entry 6r8c coloured by chain, top view.
Source organism: Human immunodeficiency virus 1
Entry author: James LC

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo hexamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-110322 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Gag protein Chain: A
Molecule details ›
Chain: A
Length: 205 amino acids
Theoretical weight: 22.97 KDa
Source organism: Human immunodeficiency virus 1
Expression system: Escherichia coli
UniProt:
  • Canonical: B6DRA0 (Residues: 133-351; Coverage: 51%)
Gene name: gag
Sequence domains:

Ligands and Environments

1 bound ligand:
Ligand 5MY 1 x 5MY
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I03
Spacegroup: P6
Unit cell:
a: 90.663Å b: 90.663Å c: 56.997Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.193 0.191 0.234
Expression system: Escherichia coli

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